AT1G15660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : centromere protein C | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a homologue of the human centromeric protein C (CENP-C). CENP-C co-localizes with the 180 bp centromeric regions of chromosomes throughout the cell cycle, but does not completely cover the 180 bp regions. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
centromere protein C (CENP-C); Has 380 Blast hits to 353 proteins in 129 species: Archae - 0; Bacteria - 6; Metazoa - 108; Fungi - 26; Plants - 78; Viruses - 8; Other Eukaryotes - 154 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5381230..5385057 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78938.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.08 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||||||
| Length | 705 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADVSRSSSL YTEEDPLQAY SGLSLFPRTL KSLSNPLPPS YQSEDLQQTH TLLQSMPFEI QSEHQEQAKA ILEDVDVDVQ LNPIPNKRER RPGLDRKRKS 101: FSLHLTTSQP PPVAPSFDPS KYPRSEDFFA AYDKFELANR EWQKQTGSSV IDIQENPPSR RPRRPGIPGR KRRPFKESFT DSYFTDVINL EASEKEIPIA 201: SEQSLESATA AHVTTVDREV DDSTVDTDKD LNNVLKDLLA CSREELEGDG AIKLLEERLQ IKSFNIEKFS IPEFQDVRKM NLKASGSNPP NRKSLSDIQN 301: ILKGTNRVAV RKNSHSPSPQ TIKHFSSPNP PVDQFSFPDI HNLLPGDQQP SEVNVQPIAK DIPNTSPTNV GTVDVASPFN DSVVKRSGED DSHIHSGIHR 401: SHLSRDGNPD ICVMDSISNR SSAMLQKNVD MRTKGKEVDV PMSESGANRN TGDRENDAEI NEETDNLERL AECASKEVTR PFTVEEDSIP YQQGASSKSP 501: NRAPEQYNTM GGSLEHAEHN QGLHEEENVN TGSASGLQVE NAPEVHKYSH KQTNKRRKRG SSDSNVKKRS KTVHGETGGD KQMKTLPHES RAKKQTKGKS 601: NEREEKKPKK TLTHEGKLFS CRKSLAAAGT KIEGGVRRST RIKSRPLEYW RGERFLYGRI HESLTTVIGI KYASPGEGKR DSRASKVKSF VSDEYKKLVD 701: FAALH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)