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AT1G15570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CYCLIN A2;3
Curator
Summary (TAIR10)
A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues.
Computational
Description (TAIR10)
CYCLIN A2;3 (CYCA2;3); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: Cyclin A2;4 (TAIR:AT1G80370.1); Has 4146 Blast hits to 4144 proteins in 368 species: Archae - 0; Bacteria - 0; Metazoa - 1906; Fungi - 532; Plants - 1053; Viruses - 34; Other Eukaryotes - 621 (source: NCBI BLink).
Protein Annotations
BioGrid:23367eggNOG:COG5024eggNOG:KOG0654EMBL:AC013453EMBL:AY072105EMBL:AY096733EMBL:CP002684
EMBL:U17890EnsemblPlants:AT1G15570EnsemblPlants:AT1G15570.1entrez:838127Gene3D:1.10.472.10GeneID:838127Genevisible:Q38819
GO:GO:0005634GO:GO:0008283GO:GO:0010311GO:GO:0010389GO:GO:0042023GO:GO:0051301GO:GO:2000123
Gramene:AT1G15570.1hmmpanther:PTHR10177hmmpanther:PTHR10177:SF239HOGENOM:HOG000167672InParanoid:Q38819IntAct:Q38819InterPro:IPR004367
InterPro:IPR006671InterPro:IPR013763iPTMnet:Q38819KEGG:ath:AT1G15570KO:K06627OMA:LAKWTMDPaxDb:Q38819
Pfam:PF00134Pfam:PF02984Pfam:Q38819PhylomeDB:Q38819PIR:F86289PIR:S71193PRIDE:Q38819
PRO:PR:Q38819ProteinModelPortal:Q38819Proteomes:UP000006548Reactome:R-ATH-113510Reactome:R-ATH-1538133Reactome:R-ATH-174184Reactome:R-ATH-68911
Reactome:R-ATH-68949Reactome:R-ATH-69205Reactome:R-ATH-69273Reactome:R-ATH-69656RefSeq:NP_173010.1SMART:SM00385SMART:SM01332
SMR:Q38819STRING:3702.AT1G15570.1SUPFAM:SSF47954TAIR:AT1G15570tair10-symbols:CYCA2;3UniGene:At.1679UniProt:Q38819
Coordinates (TAIR10) chr1:+:5363034..5365218
Molecular Weight (calculated) 50644.50 Da
IEP (calculated) 8.87
GRAVY (calculated) -0.34
Length 450 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)