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AT1G15510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At1g15510-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Encodes a pentatricopeptide repeat protein required for chloroplast transcript accD RNA editing and early chloroplast biogenesis.
Computational
Description (TAIR10)
EARLY CHLOROPLAST BIOGENESIS2 (ECB2); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 49765 Blast hits to 13993 proteins in 266 species: Archae - 0; Bacteria - 6; Metazoa - 64; Fungi - 140; Plants - 48782; Viruses - 0; Other Eukaryotes - 773 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC013453EMBL:CP002684
EnsemblPlants:AT1G15510EnsemblPlants:AT1G15510.1entrez:838121ExpressionAtlas:Q9M9E2
Gene3D:1.25.40.10GeneID:838121Genevisible:Q9M9E2GO:GO:0008270
GO:GO:0009416GO:GO:0009451GO:GO:0009507GO:GO:0009658
GO:GO:0040007Gramene:AT1G15510.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF156
HOGENOM:HOG000237570InParanoid:Q9M9E2InterPro:IPR002885InterPro:IPR011990
InterPro:IPR032867KEGG:ath:AT1G15510OMA:YVRCGRMPaxDb:Q9M9E2
Pfam:PF01535Pfam:PF13041Pfam:PF13812Pfam:PF14432
Pfam:Q9M9E2Pfscan:PS51375PhylomeDB:Q9M9E2PIR:H86288
PRIDE:Q9M9E2PRO:PR:Q9M9E2PROSITE:PS51375ProteinModelPortal:Q9M9E2
Proteomes:UP000006548RefSeq:NP_173004.1SMR:Q9M9E2STRING:3702.AT1G15510.1
TAIR:AT1G15510tair10-symbols:ATECB2tair10-symbols:ECB2tair10-symbols:VAC1
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.41931UniProt:E2FJQ9
UniProt:Q9M9E2
Coordinates (TAIR10) chr1:+:5329111..5331711
Molecular Weight (calculated) 97702.60 Da
IEP (calculated) 7.89
GRAVY (calculated) -0.06
Length 866 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSAQSPHF YLNPGKSNSF QSKAYKQRNV NFYWNFGIRR LFLRKSQGLS VLSSSSSSTH FSNSQLHGLC ANGKLEEAMK LLNSMQELRV AVDEDVFVAL
101: VRLCEWKRAQ EEGSKVYSIA LSSMSSLGVE LGNAFLAMFV RFGNLVDAWY VFGKMSERNL FSWNVLVGGY AKQGYFDEAM CLYHRMLWVG GVKPDVYTFP
201: CVLRTCGGIP DLARGKEVHV HVVRYGYELD IDVVNALITM YVKCGDVKSA RLLFDRMPRR DIISWNAMIS GYFENGMCHE GLELFFAMRG LSVDPDLMTL
301: TSVISACELL GDRRLGRDIH AYVITTGFAV DISVCNSLTQ MYLNAGSWRE AEKLFSRMER KDIVSWTTMI SGYEYNFLPD KAIDTYRMMD QDSVKPDEIT
401: VAAVLSACAT LGDLDTGVEL HKLAIKARLI SYVIVANNLI NMYSKCKCID KALDIFHNIP RKNVISWTSI IAGLRLNNRC FEALIFLRQM KMTLQPNAIT
501: LTAALAACAR IGALMCGKEI HAHVLRTGVG LDDFLPNALL DMYVRCGRMN TAWSQFNSQK KDVTSWNILL TGYSERGQGS MVVELFDRMV KSRVRPDEIT
601: FISLLCGCSK SQMVRQGLMY FSKMEDYGVT PNLKHYACVV DLLGRAGELQ EAHKFIQKMP VTPDPAVWGA LLNACRIHHK IDLGELSAQH IFELDKKSVG
701: YYILLCNLYA DCGKWREVAK VRRMMKENGL TVDAGCSWVE VKGKVHAFLS DDKYHPQTKE INTVLEGFYE KMSEVGLTKI SESSSMDETE ISRDEIFCGH
801: SERKAIAFGL INTVPGMPIW VTKNLSMCEN CHDTVKFISK TVRREISVRD AEHFHHFKDG ECSCGD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)