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AT1G15430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1644)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G80220.1); Has 273 Blast hits to 249 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVC7eggNOG:ENOG411061KEMBL:AF360299EMBL:AY051058EMBL:CP002684EnsemblPlants:AT1G15430EnsemblPlants:AT1G15430.1
EnsemblPlants:AT1G15430.2entrez:838114Gene3D:3.30.40.10GeneID:838114Gramene:AT1G15430.1Gramene:AT1G15430.2hmmpanther:PTHR31197
hmmpanther:PTHR31197:SF5HOGENOM:HOG000115151InterPro:IPR012866InterPro:IPR013083KEGG:ath:AT1G15430OMA:KSTCARRPfam:PF07800
PhylomeDB:Q9C5E6Proteomes:UP000006548RefSeq:NP_563977.1RefSeq:NP_973835.1STRING:3702.AT1G15430.1TAIR:AT1G15430UniGene:At.11427
UniProt:Q9C5E6
Coordinates (TAIR10) chr1:+:5305011..5305790
Molecular Weight (calculated) 30104.80 Da
IEP (calculated) 8.65
GRAVY (calculated) -0.80
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MHKERGKMPV SSNRNRVSPY PLRSCRNKKQ KEVEASSSPV ELESVSEWED VRCVICMEPP HNAVLLQCSS FSKGCRAYMC DTSARHSNCF KQYRRSNSSS
101: RCSGKTLHCP YCRGEVQGTM KSTCARRFMN ARPRCCTVDK CDFSGTYAQL KNHLKTEHPG FTPPKLDPWE QHMWEQLERE AEYIEMLNAR QRWDAEQRLL
201: ATSLHQLPYR HPMIDLNFDA LVHNLFLGAS MESRASTDNY PAHIPRLEFH APMYPRWTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)