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AT1G15410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : aspartate-glutamate racemase family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
aspartate-glutamate racemase family; FUNCTIONS IN: racemase and epimerase activity, acting on amino acids and derivatives; INVOLVED IN: metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Asp/Glu/hydantoin racemase (InterPro:IPR015942), Aspartate racemase (InterPro:IPR004380), Asp/Glu racemase (InterPro:IPR001920); Has 2436 Blast hits to 2424 proteins in 674 species: Archae - 57; Bacteria - 1708; Metazoa - 0; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1794eggNOG:ENOG410II6AEMBL:AC007591EMBL:BT002350EMBL:CP002684EnsemblPlants:AT1G15410EnsemblPlants:AT1G15410.1
entrez:838111Gene3D:3.40.50.1860GeneID:838111GO:GO:0006807GO:GO:0009507GO:GO:0036361Gramene:AT1G15410.1
hmmpanther:PTHR21198hmmpanther:PTHR21198:SF7InterPro:IPR001920InterPro:IPR015942KEGG:00471+5.1.1.3KEGG:ath:AT1G15410OMA:LSAGFYQ
Pfam:PF01177PhylomeDB:Q9XI28Proteomes:UP000006548RefSeq:NP_172993.1SMR:Q9XI28STRING:3702.AT1G15410.1SUPFAM:SSF53681
TAIR:AT1G15410UniGene:At.41934UniGene:At.71257unipathway:UPA00219UniProt:Q9XI28
Coordinates (TAIR10) chr1:+:5299577..5300681
Molecular Weight (calculated) 36707.70 Da
IEP (calculated) 7.16
GRAVY (calculated) -0.16
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MYLQIFNNPS HGLAHLCYSS RVSCRVRLSR VLAMPPSSVL LHMDESNDLP KPKKGFCLSE DSRNSLNSLP ADSLLRQANT VGIIGGVSTD STLKFVKKLV
101: DWSSNDGKSS LPFVLCSDPA LNKELLLYEE NSYPSLYHRE ESTPVDPKLI VENLRNKRRY LERCGAKLIL MPCHIAHIWY EEVCEGSLVP LLHMGECIAK
201: ELQEAKMKPL EAGNPLRVGV MATSATLSAG FYQEKLQSNG FEAVLPDKAT MEHTVIPSIE AMKRKDMEGA RNLLRIALQV LLVQAVNVVM LGSDEMRDLL
301: PGDDPLLKKC VDPMDALARS AIKWAENRCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)