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AT1G15360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.
Computational
Description (TAIR10)
SHINE 1 (SHN1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25390.2); Has 5918 Blast hits to 5765 proteins in 265 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 23; Plants - 5843; Viruses - 2; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW24eggNOG:ENOG4111RRZEMBL:AC007591EMBL:AK117941EMBL:AY085720EMBL:AY378101EMBL:BT005220
EMBL:CP002684EnsemblPlants:AT1G15360EnsemblPlants:AT1G15360.1entrez:838105Gene3D:3.30.730.10GeneID:838105Genevisible:Q9XI33
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009414GO:GO:0009873GO:GO:0010143GO:GO:0010166
GO:GO:0043565Gramene:AT1G15360.1hmmpanther:PTHR31194hmmpanther:PTHR31194:SF12HOGENOM:HOG000237624InterPro:IPR001471InterPro:IPR016177
InterPro:IPR017392KEGG:ath:AT1G15360OMA:AENSHIGPANTHER:PTHR31194PaxDb:Q9XI33Pfam:PF00847Pfam:Q9XI33
Pfscan:PS51032PhylomeDB:Q9XI33PIR:B86288PRIDE:Q9XI33PRINTS:PR00367PRO:PR:Q9XI33PROSITE:PS51032
ProteinModelPortal:Q9XI33Proteomes:UP000006548RefSeq:NP_172988.1SMART:SM00380SMR:Q9XI33STRING:3702.AT1G15360.1SUPFAM:SSF54171
TAIR:AT1G15360tair10-symbols:SHN1tair10-symbols:WIN1UniGene:At.11422UniProt:Q9XI33
Coordinates (TAIR10) chr1:+:5283609..5284506
Molecular Weight (calculated) 21697.40 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.51
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)