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AT1G15340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : methyl-CPG-binding domain 10
Curator
Summary (TAIR10)
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational
Description (TAIR10)
methyl-CPG-binding domain 10 (MBD10); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 11 (TAIR:AT3G15790.1); Has 137026 Blast hits to 72034 proteins in 3183 species: Archae - 674; Bacteria - 27556; Metazoa - 48373; Fungi - 14456; Plants - 6804; Viruses - 747; Other Eukaryotes - 38416 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZCUeggNOG:ENOG410YRVPEMBL:AC007591EMBL:AK230256
EMBL:AY094439EMBL:BT020367EMBL:CP002684EnsemblPlants:AT1G15340
EnsemblPlants:AT1G15340.1entrez:838103Gene3D:3.30.890.10GeneID:838103
Genevisible:Q9XI36GO:GO:0005634GO:GO:0005829GO:GO:0006351
GO:GO:0006355GO:GO:0008327hmmpanther:PTHR33729hmmpanther:PTHR33729:SF1
HOGENOM:HOG000120681InParanoid:Q9XI36InterPro:IPR001739InterPro:IPR016177
iPTMnet:Q9XI36KEGG:ath:AT1G15340ncoils:CoilOMA:ASWKKLF
PaxDb:Q9XI36Pfam:PF01429Pfam:Q9XI36Pfscan:PS50982
PIR:G86287PRIDE:Q9XI36PRO:PR:Q9XI36ProMEX:Q9XI36
PROSITE:PS50982ProteinModelPortal:Q9XI36Proteomes:UP000006548RefSeq:NP_001185003.1
RefSeq:NP_563971.1STRING:3702.AT1G15340.1SUPFAM:SSF54171TAIR:AT1G15340
tair10-symbols:MBD10UniGene:At.27594UniGene:At.70811UniProt:Q9XI36
Coordinates (TAIR10) chr1:-:5275895..5277474
Molecular Weight (calculated) 42360.00 Da
IEP (calculated) 4.34
GRAVY (calculated) -1.38
Length 384 amino acids
Sequence (TAIR10)
(BLAST)
001: MENTDELVSI ELPAPASWKK LFYPKRAGTP RKTEIVFVAP TGEEISSRKQ LEQYLKAHPG NPVISEFEWT TGETPRRSSR ISQKVKATTP TPDKEPLLKK
101: RRSSLTKKDN KEAAEKNEEA AVKENMDVDK DGKTENAEAE KEKEKEGVTE IAEAEKENNE GEKTEAEKVN KEGEKTEAGK EGQTEIAEAE KEKEGEKAEA
201: ENKEAEVVRD KKESMEVDTS ELEKKAGSGE GAEEPSKVEG LKDTEMKEAQ EVVTEADVEK KPAEEKTENK GSVTTEANGE QNVTLGEPNL DADAEADKGK
301: ESKEYDEKTT EAEANKENDT QESDEKKTEA AANKENETQE SDVKKTEAAV AEEKSNDMKA EDTNRSLEAN QVQQQQGAAA SVSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)