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AT1G15330.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cystathionine beta-synthase (CBS) protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cystathionine beta-synthase (CBS) protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT1G80090.1); Has 526 Blast hits to 526 proteins in 132 species: Archae - 6; Bacteria - 4; Metazoa - 257; Fungi - 91; Plants - 124; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQNDeggNOG:ENOG41100IMEMBL:AC007591EMBL:AK229160
EMBL:BT023415EMBL:BT026513EMBL:CP002684EnsemblPlants:AT1G15330
EnsemblPlants:AT1G15330.1entrez:838102GeneID:838102Genevisible:Q9XI37
GO:GO:0003006GO:GO:0009553GO:GO:0009555GO:GO:0010183
GO:GO:0048443Gramene:AT1G15330.1hmmpanther:PTHR13780hmmpanther:PTHR13780:SF51
HOGENOM:HOG000238797InParanoid:Q9XI37InterPro:IPR000644KEGG:ath:AT1G15330
OMA:IIGHCLEPaxDb:Q9XI37Pfam:PF00571Pfam:Q9XI37
Pfscan:PS51371PhylomeDB:Q9XI37PIR:F86287PRIDE:Q9XI37
PRO:PR:Q9XI37PROSITE:PS51371ProteinModelPortal:Q9XI37Proteomes:UP000006548
RefSeq:NP_172985.1SMART:SM00116SMR:Q9XI37STRING:3702.AT1G15330.1
SUPFAM:SSF54631TAIR:AT1G15330UniGene:At.11420UniProt:Q9XI37
Coordinates (TAIR10) chr1:+:5274368..5275499
Molecular Weight (calculated) 38598.60 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.03
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MQEEKSKEDH SRLINVTAKD LTVRNRRLVE VPYTATLSHA MNTLVANSIS ALPVAAPPGH WIGAGGSMIM ESDKQTGVVR KHYIGILTML DILAHIAGED
101: SNLSDLDRKM SSQVSSIIGH CLEGLSLWTL NPNTSVLECM EVFSKGIHRA LVPVESSIES NNTIAGVELI ESASAYKMLT QMDLLRFLKD HHFDDLKTVL
201: SRSISDLGAV NDSVYAITER TTVSNAINVM KGALLNAVPI VHAPDIAQED HLQLVNGRHR KVIGTFSATD LKGCRLPELQ TWLPLTALEF TEKTSGKERE
301: VVSCGVESTM EEAIEKVVTR GVHRVWVMDQ QGLLQGVVSL TDIIRSLRST LS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)