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AT1G15290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQUQeggNOG:KOG1839EMBL:CP002684EnsemblPlants:AT1G15290EnsemblPlants:AT1G15290.1entrez:838097Gene3D:1.25.40.10
GeneID:838097GO:GO:0005829Gramene:AT1G15290.1hmmpanther:PTHR12601hmmpanther:PTHR12601:SF18InParanoid:F4HZK4InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734iPTMnet:F4HZK4KEGG:ath:AT1G15290KO:K03255ncoils:CoilOMA:FAKAYES
PaxDb:F4HZK4Pfam:PF12807Pfam:PF13424Pfam:PF15044Pfscan:PS50005Pfscan:PS50293PRIDE:F4HZK4
PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:F4HZK4Proteomes:UP000006548RefSeq:NP_172981.3SMART:SM00028STRING:3702.AT1G15290.1
SUPFAM:SSF48452TAIR:AT1G15290UniGene:At.11418UniProt:F4HZK4
Coordinates (TAIR10) chr1:-:5257327..5264814
Molecular Weight (calculated) 177644.00 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.42
Length 1608 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAPRSSKGKS NNKGKGGDKK KRDDKLLAPS LVEITVTTPY ETQVILKGVS TDKIIDVRRL LASHVETCHF TNYSLSHKVK GHKLNDNIQV LSLKPCFLRM
0101: IPEEYLEESQ ALTQVRRVID IVACTTRFFS KSPNKSIVAG NANPTPAPDG LDMVAIHTTP KLSQFYEFFS IHHLSPPILH LKKVDGEEAG EKRDGDYFGL
0201: KVKICNGKVI HVIASVKGFF AVGKQLSHCH SIVDLLQNVS NAFAKAYESL MKAFTDRNKF GNLPFGLRSN TWLVPSPVSE SASPLPTEDE HWGGNGGGQG
0301: RNGEYDHRPW AAEFSVLATL PCKTEEERVI RDKKAFLLHS QFIDTSVQRA VRAICNVMDT NQQTSGTTDL PAGSILLEDH VGDLSIVVKR DIASLDSKPE
0401: ATFQNDAFVL SSEELAERNL LKGITADESV IVHDTPALGK VIVRQCGYTA VVNVKGQTQK AMSDFRDILI DDLPDGGANA LNLNSLRVEF HRPHSVGTSV
0501: ENQPTQLDWD DLESYRCIIQ ELVKINLTKL EETRVSSVRP IRWELGSTWV QHLQKKETDV CGKPATNDET ELSVKGLGKQ FKDLKSKSKK SENISAVNEK
0601: DTRLHELNEE DDLGQKSIDG LFTELKELLS EEAFSRLKET GTGLHLKSKE ELTNMAYGYY DEIALPRLVA DFGSLELSPV DGRTLTDFMH IRGLQMRSLG
0701: HVAKLAEKLP HIQSLCIHEM ITRAFKHLLR AVIASVNNMA ELPVAVAASL NFMLGRRELE GCDRIPGEEY CLRLQWLQKF LSRKFGWIQK DEFHHLKKFS
0801: ILRGLCQKVG LELVSRDFDF DSPNPFMSSD IIGLVPVCKH VLCISSDGRT LLESSKLALD KGKLDDAVSY GTKALVKMIA VCGPYHRNTA CAYSLLAVVL
0901: YHTGDFNQAT IYQQKALDIN ERELGLDHPD TMKSYGDLSV FYYRLQHFEL ALKYVNRALF LLHFTCGLSH PNTAATYINV AMMEKEVGND HLALRYLHEA
1001: LKSNKRLLGA DHIQTAASYH AIAVALSFME AHSLSVQHEQ TTLQILTAKL GADDLRTQDA AAWLEYFESR AIEQQEAGRN GIPKPDASIA SKGHLSVSDL
1101: LDYISSDPDT KGNVAHRKHR RARILQVNDK VASADDDAHR VASQIDIVTW NNVAEADVTK SRSEVNDPDT VVDKTNIETG DIVVHRLNVD RQTVEESTLD
1201: EGWQEAYSKG RSGNGAGRKS RQRQPDLMKK RMLLNKHHNR NQDVQQQNIY SPLQKTSKGP SLSKSSPRRA LKNAEIDVST NTTKPQLKAS GAAAVTSTTL
1301: ASKSLSYKEV ALAPPGTVLK PMLEKLELNL ERTETQIYRT SSASSGEESK SDTVMLDLPI EGTELHCEKQ ESQESAESVE NLTSESEGDL GSYRGKKTSD
1401: ISRTKLSASA EPYNPGGFLV IDLQSSAATI GSYPIMVADP ISWAVVSCGI HSPPYYSAIH SNGVGTPRSM NPDAPEFVPR RSLQNSSQHA GEDASVSVDS
1501: SSCLKAEKDA VDLKKRELAS FIVKSSQKEV PAALSKTSPE AESGGTSEKD SAVTEIVYSR EEENGANANE TNGGEGFVIV AKKRRRKNKV RLTNVAAGLY
1601: HQPSSVCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)