AT1G15290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5257327..5264814 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 177644.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1608 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAPRSSKGKS NNKGKGGDKK KRDDKLLAPS LVEITVTTPY ETQVILKGVS TDKIIDVRRL LASHVETCHF TNYSLSHKVK GHKLNDNIQV LSLKPCFLRM 0101: IPEEYLEESQ ALTQVRRVID IVACTTRFFS KSPNKSIVAG NANPTPAPDG LDMVAIHTTP KLSQFYEFFS IHHLSPPILH LKKVDGEEAG EKRDGDYFGL 0201: KVKICNGKVI HVIASVKGFF AVGKQLSHCH SIVDLLQNVS NAFAKAYESL MKAFTDRNKF GNLPFGLRSN TWLVPSPVSE SASPLPTEDE HWGGNGGGQG 0301: RNGEYDHRPW AAEFSVLATL PCKTEEERVI RDKKAFLLHS QFIDTSVQRA VRAICNVMDT NQQTSGTTDL PAGSILLEDH VGDLSIVVKR DIASLDSKPE 0401: ATFQNDAFVL SSEELAERNL LKGITADESV IVHDTPALGK VIVRQCGYTA VVNVKGQTQK AMSDFRDILI DDLPDGGANA LNLNSLRVEF HRPHSVGTSV 0501: ENQPTQLDWD DLESYRCIIQ ELVKINLTKL EETRVSSVRP IRWELGSTWV QHLQKKETDV CGKPATNDET ELSVKGLGKQ FKDLKSKSKK SENISAVNEK 0601: DTRLHELNEE DDLGQKSIDG LFTELKELLS EEAFSRLKET GTGLHLKSKE ELTNMAYGYY DEIALPRLVA DFGSLELSPV DGRTLTDFMH IRGLQMRSLG 0701: HVAKLAEKLP HIQSLCIHEM ITRAFKHLLR AVIASVNNMA ELPVAVAASL NFMLGRRELE GCDRIPGEEY CLRLQWLQKF LSRKFGWIQK DEFHHLKKFS 0801: ILRGLCQKVG LELVSRDFDF DSPNPFMSSD IIGLVPVCKH VLCISSDGRT LLESSKLALD KGKLDDAVSY GTKALVKMIA VCGPYHRNTA CAYSLLAVVL 0901: YHTGDFNQAT IYQQKALDIN ERELGLDHPD TMKSYGDLSV FYYRLQHFEL ALKYVNRALF LLHFTCGLSH PNTAATYINV AMMEKEVGND HLALRYLHEA 1001: LKSNKRLLGA DHIQTAASYH AIAVALSFME AHSLSVQHEQ TTLQILTAKL GADDLRTQDA AAWLEYFESR AIEQQEAGRN GIPKPDASIA SKGHLSVSDL 1101: LDYISSDPDT KGNVAHRKHR RARILQVNDK VASADDDAHR VASQIDIVTW NNVAEADVTK SRSEVNDPDT VVDKTNIETG DIVVHRLNVD RQTVEESTLD 1201: EGWQEAYSKG RSGNGAGRKS RQRQPDLMKK RMLLNKHHNR NQDVQQQNIY SPLQKTSKGP SLSKSSPRRA LKNAEIDVST NTTKPQLKAS GAAAVTSTTL 1301: ASKSLSYKEV ALAPPGTVLK PMLEKLELNL ERTETQIYRT SSASSGEESK SDTVMLDLPI EGTELHCEKQ ESQESAESVE NLTSESEGDL GSYRGKKTSD 1401: ISRTKLSASA EPYNPGGFLV IDLQSSAATI GSYPIMVADP ISWAVVSCGI HSPPYYSAIH SNGVGTPRSM NPDAPEFVPR RSLQNSSQHA GEDASVSVDS 1501: SSCLKAEKDA VDLKKRELAS FIVKSSQKEV PAALSKTSPE AESGGTSEKD SAVTEIVYSR EEENGANANE TNGGEGFVIV AKKRRRKNKV RLTNVAAGLY 1601: HQPSSVCA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)