AT1G15280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CASC3/Barentsz eIF4AIII binding | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CASC3/Barentsz eIF4AIII binding; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G80000.2); Has 4070 Blast hits to 2291 proteins in 306 species: Archae - 2; Bacteria - 223; Metazoa - 1249; Fungi - 308; Plants - 219; Viruses - 71; Other Eukaryotes - 1998 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5252538..5256214 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63311.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.53 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.12 | ||||||||||||||||||||||||||||
| Length | 584 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATSEAEYES DPEELNRSLA TRRREASDDD SDDDDAVRDV KNQRAVVDSD LSDEEVGTVK YDNDEDGEDS YEDDEEESGG GIDNDKSGVV KEAGDMNGEE 101: ENEKEKLQAA VPTGGAFYMH DDRFQEMSAG GNRRMRGGRR QWGSGEERKW GHDKFEEMNT GEKHSDRMSR GRFRGHGRGR GQGRGYARGS SSNTLTSSGQ 201: QIYVPKAVSR GRGPRKSDTP LRNENQAHSE QSKQLRNSNG SQNSREKMPH LDSRRSPTAP AKTENQGAHA KKNVAVSSLS SASPPFYPSA PSSNVVHGIQ 301: VSMERLHTNE SVTPSGKKYR NTKSGYSPVW TAKTLQSTSQ GRGAPAAGNT FYPQSHSQGD RFSSPMQLNG DSKGTGQRPS GQGFDQHSAV VRSLSSSPQK 401: TSLSRNRYPP DEIESSSETA ALIAKGKGTL RPGGSSSFMY SGSQMMGRPE SLTSADNSNF PTFLPVMQFG GQHGGVPTFG MAYPGYVQSE DGVRNPEMTW 501: MPVLAGPGAL GASYSPPPYA AHQAHNPGLP SSAGFSSKDS STNTLNDLVK PMESPEVAEN GVSERQSNNP SKQPRRYSEM TFSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)