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AT1G15280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CASC3/Barentsz eIF4AIII binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CASC3/Barentsz eIF4AIII binding; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G80000.2); Has 4070 Blast hits to 2291 proteins in 306 species: Archae - 2; Bacteria - 223; Metazoa - 1249; Fungi - 308; Plants - 219; Viruses - 71; Other Eukaryotes - 1998 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVBGeggNOG:ENOG410Y9ETEMBL:CP002684EnsemblPlants:AT1G15280EnsemblPlants:AT1G15280.1entrez:838095ExpressionAtlas:F4HZK3
GeneID:838095Gramene:AT1G15280.1hmmpanther:PTHR22814hmmpanther:PTHR22814:SF97InterPro:IPR018545ncoils:CoilPaxDb:F4HZK3
Pfam:PF09405PRIDE:F4HZK3ProteinModelPortal:F4HZK3Proteomes:UP000006548RefSeq:NP_850944.1SMART:SM01044SMR:F4HZK3
STRING:3702.AT1G15280.2TAIR:AT1G15280UniGene:At.41937UniProt:F4HZK3
Coordinates (TAIR10) chr1:+:5252538..5256214
Molecular Weight (calculated) 63311.00 Da
IEP (calculated) 6.53
GRAVY (calculated) -1.12
Length 584 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSEAEYES DPEELNRSLA TRRREASDDD SDDDDAVRDV KNQRAVVDSD LSDEEVGTVK YDNDEDGEDS YEDDEEESGG GIDNDKSGVV KEAGDMNGEE
101: ENEKEKLQAA VPTGGAFYMH DDRFQEMSAG GNRRMRGGRR QWGSGEERKW GHDKFEEMNT GEKHSDRMSR GRFRGHGRGR GQGRGYARGS SSNTLTSSGQ
201: QIYVPKAVSR GRGPRKSDTP LRNENQAHSE QSKQLRNSNG SQNSREKMPH LDSRRSPTAP AKTENQGAHA KKNVAVSSLS SASPPFYPSA PSSNVVHGIQ
301: VSMERLHTNE SVTPSGKKYR NTKSGYSPVW TAKTLQSTSQ GRGAPAAGNT FYPQSHSQGD RFSSPMQLNG DSKGTGQRPS GQGFDQHSAV VRSLSSSPQK
401: TSLSRNRYPP DEIESSSETA ALIAKGKGTL RPGGSSSFMY SGSQMMGRPE SLTSADNSNF PTFLPVMQFG GQHGGVPTFG MAYPGYVQSE DGVRNPEMTW
501: MPVLAGPGAL GASYSPPPYA AHQAHNPGLP SSAGFSSKDS STNTLNDLVK PMESPEVAEN GVSERQSNNP SKQPRRYSEM TFSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)