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AT1G15220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytochrome c biogenesis protein family
Curator
Summary (TAIR10)
Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2.
Computational
Description (TAIR10)
CCMH; CONTAINS InterPro DOMAIN/s: Cytochrome C biogenesis protein CcmH (InterPro:IPR005616); Has 3193 Blast hits to 3193 proteins in 721 species: Archae - 0; Bacteria - 1884; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 1278 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3088eggNOG:ENOG410IWATEMBL:AC007591EMBL:AY050392EMBL:AY085498EMBL:AY097355EMBL:CP002684
EnsemblPlants:AT1G15220EnsemblPlants:AT1G15220.1EnsemblPlants:AT1G15220.2entrez:838089GeneID:838089Genevisible:Q9XI46GO:GO:0005739
GO:GO:0005743GO:GO:0009793GO:GO:0016021GO:GO:0016491GO:GO:0017004GO:GO:0043234GO:GO:0046872
GO:GO:0055114Gramene:AT1G15220.1Gramene:AT1G15220.2hmmpanther:PTHR30009HOGENOM:HOG000005842IntAct:Q9XI46InterPro:IPR005616
KEGG:ath:AT1G15220OMA:NVDIMALPaxDb:Q9XI46Pfam:PF03918Pfam:Q9XI46PhylomeDB:Q9XI46PIR:D86286
PRO:PR:Q9XI46ProteinModelPortal:Q9XI46Proteomes:UP000006548RefSeq:NP_563966.1RefSeq:NP_973834.1SMR:Q9XI46STRING:3702.AT1G15220.1
TAIR:AT1G15220tair10-symbols:ATCCMHtair10-symbols:CCMHTMHMM:TMhelixUniGene:At.26582UniGene:At.44195UniProt:Q9XI46
Coordinates (TAIR10) chr1:-:5240471..5241117
Molecular Weight (calculated) 17885.80 Da
IEP (calculated) 9.57
GRAVY (calculated) -0.32
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKTDEERKK AQMLDARARN ISHNVRCTEC GSQSIEDSQA DIAILLRQLI RNEIGAGKTD KEIYSKLEDE FGETVLYAPK FDLQTAALWL TPVIIAGGTA
101: AGIVYQKHRL RKNVDIMALN LIRGVPLTPK ERVTILDVLI PPSPPPQGVV SRLRRWLNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)