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AT1G15200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : protein-protein interaction regulator family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
protein-protein interaction regulator family protein; CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786); Has 5330 Blast hits to 4034 proteins in 383 species: Archae - 10; Bacteria - 289; Metazoa - 2328; Fungi - 484; Plants - 229; Viruses - 50; Other Eukaryotes - 1940 (source: NCBI BLink).
Protein Annotations
EMBL:AF360275EMBL:AY051037EMBL:CP002684EnsemblPlants:AT1G15200EnsemblPlants:AT1G15200.1entrez:838086ExpressionAtlas:Q9C5G2
GeneID:838086Gramene:AT1G15200.1hmmpanther:PTHR12707HOGENOM:HOG000029887IntAct:Q9C5G2InterPro:IPR006786ncoils:Coil
Pfam:PF04696PhylomeDB:Q9C5G2Proteomes:UP000006548RefSeq:NP_563965.1TAIR:AT1G15200UniGene:At.20307UniProt:Q9C5G2
Coordinates (TAIR10) chr1:-:5228477..5231017
Molecular Weight (calculated) 48908.00 Da
IEP (calculated) 5.45
GRAVY (calculated) -1.31
Length 423 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDTALEKTA EELRHEIDEL HRQQREITER LRDPRGLRRG GFSNVAPRNQ GRRGFPRPAE RNDVEDEPPA KRRLSSAVVK VDGEDVSKDG EFPVDGNGTQ
101: VKVGENGTSD QSDKKQSGLH RGSWSQRDAE QRRTNKRYEA FALPEPAPRV LPKNEDPKLV NRNRRMLGNL LGTLEKFRKE DKQRSGTDAY ARRTAALQRA
201: EEKAREESER LRLQERENLT EKRRRDLTLR ARVAAKAEQK KLELLFLQWS EHQKKLSNFI RTKAEPRIYY APVKPLEEDT SEVEQQKERT FLEWKAARRQ
301: EVSEYQKEIE EQCLGNVEKE LERWQNARKA RKANNEGMNL QETMDKELET HRMEHGPKKR KIPGGGVGDE DEEDEVEDIN GGEDEMIMDD LLEEGGDGTI
401: KEEVATDTVK AEAVEEDIKH EVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)