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AT1G15140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD/NAD(P)-binding oxidoreductase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD/NAD(P)-binding oxidoreductase; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Phenol hydroxylase reductase (InterPro:IPR001221); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3); Has 6042 Blast hits to 6042 proteins in 1578 species: Archae - 81; Bacteria - 4817; Metazoa - 13; Fungi - 213; Plants - 309; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0543eggNOG:ENOG410IVEFEMBL:AC007591EMBL:AF344328
EMBL:AY054626EMBL:AY072475EMBL:CP002684EnsemblPlants:AT1G15140
EnsemblPlants:AT1G15140.1entrez:838079ExpressionAtlas:Q9XI55GeneID:838079
GO:GO:0005507GO:GO:0009507GO:GO:0009570GO:GO:0009579
GO:GO:0009735GO:GO:0009941GO:GO:0016491Gramene:AT1G15140.1
hmmpanther:PTHR19370hmmpanther:PTHR19370:SF123HOGENOM:HOG000264529InterPro:IPR001221
InterPro:IPR001433InterPro:IPR017927InterPro:IPR017938KEGG:ath:AT1G15140
OMA:FHISIDIPfam:PF00175Pfscan:PS51384PhylomeDB:Q9XI55
PIR:C86285PRINTS:PR00410PROSITE:PS51384Proteomes:UP000006548
RefSeq:NP_563963.1SMR:Q9XI55STRING:3702.AT1G15140.1SUPFAM:SSF52343
SUPFAM:SSF63380TAIR:AT1G15140UniGene:At.22546UniProt:Q9XI55
Coordinates (TAIR10) chr1:-:5210403..5212137
Molecular Weight (calculated) 31925.30 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.02
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTLPFAPSV THAHFSHSLS PMFILRHLPL TRHLRLSRNN RVASVVSAAA VRQDASLWTP APLSLIESAA ESLFHISIDI SNAPDLVASY TRPGQYLQIR
101: VPDVEKPSFM AIASPPSLAS SRGAFEFLVK SIAGSTAEIL CGLKKGETVE LSSVMGNGFN IDLIDPPEEY PTVLIFATGS GISPIRSLIE SGFGADRRSD
201: VRLYYGARNL NRMAYQEKFK EWESAGVKVV PVLSQPDDGW KGETGYVQAA FARAKQLSAP KATGAVLCGQ KQMAEEITSM LVADGVSNDK LLKNF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)