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AT1G15100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING-H2 finger A2A
Curator
Summary (TAIR10)
Encodes a putative RING-H2 finger protein RHA2a.
Computational
Description (TAIR10)
RING-H2 finger A2A (RHA2A); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: response to salt stress, positive regulation of abscisic acid mediated signaling pathway, regulation of response to osmotic stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger protein 2B (TAIR:AT2G01150.1); Has 8620 Blast hits to 8597 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 2194; Fungi - 672; Plants - 4576; Viruses - 12; Other Eukaryotes - 1166 (source: NCBI BLink).
Protein Annotations
BioGrid:23313EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC007591EMBL:AF078822EMBL:AY075590
EMBL:AY088303EMBL:AY094057EMBL:CP002684EMBL:DQ059097EnsemblPlants:AT1G15100EnsemblPlants:AT1G15100.1entrez:838073
Gene3D:3.30.40.10GeneID:838073Genevisible:Q9ZT50GO:GO:0000209GO:GO:0004842GO:GO:0005634GO:GO:0005737
GO:GO:0005886GO:GO:0008270GO:GO:0009651GO:GO:0009738GO:GO:0009789GO:GO:0016567GO:GO:0016874
GO:GO:0042787GO:GO:0043161GO:GO:0047484GO:GO:0061630Gramene:AT1G15100.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF175
HOGENOM:HOG000090787InParanoid:Q9ZT50IntAct:Q9ZT50InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G15100KO:K16282
OMA:KLECRHVPaxDb:Q9ZT50Pfam:PF13639Pfam:Q9ZT50Pfscan:PS50089PhylomeDB:Q9ZT50PIR:T51842
PRO:PR:Q9ZT50PROSITE:PS50089ProteinModelPortal:Q9ZT50Proteomes:UP000006548RefSeq:NP_172962.1SMART:SM00184SMR:Q9ZT50
STRING:3702.AT1G15100.1SUPFAM:SSF57850TAIR:AT1G15100tair10-symbols:RHA2ATMHMM:TMhelixUniGene:At.10851UniPathway:UPA00143
UniProt:Q9ZT50
Coordinates (TAIR10) chr1:-:5193703..5194170
Molecular Weight (calculated) 16983.70 Da
IEP (calculated) 7.68
GRAVY (calculated) 0.16
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLQGQLSDV SSDSIPLMLL SLLAVFINHL RSFLLRLTSK SNPNLPVDDV SIASGLANII VLADQLSLNR LFSYRCGDGG GGGSDCVVCL SKLKEGEEVR
101: KLECRHVFHK KCLEGWLHQF NFTCPLCRSA LVSDDCVSKT QRSVGRDLIS CFSLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)