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AT1G14980.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:22968828 (2012): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:22363647 (2012): extracellular region apoplast
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:18385124 (2008): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12492832 (2002): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chaperonin 10
Curator
Summary (TAIR10)
Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.
Computational
Description (TAIR10)
chaperonin 10 (CPN10); FUNCTIONS IN: copper ion binding, chaperone binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: GroES-like family protein (TAIR:AT1G23100.1); Has 9195 Blast hits to 9085 proteins in 2839 species: Archae - 7; Bacteria - 6160; Metazoa - 328; Fungi - 119; Plants - 343; Viruses - 2; Other Eukaryotes - 2236 (source: NCBI BLink).
Protein Annotations
BioGrid:23303eggNOG:COG0234eggNOG:KOG1641EMBL:AC012189
EMBL:AY063928EMBL:AY086708EMBL:AY091252EMBL:CP002684
EMBL:D88314EMBL:L02843EnsemblPlants:AT1G14980EnsemblPlants:AT1G14980.1
entrez:838063Gene3D:2.30.33.40GeneID:838063Genevisible:P34893
GO:GO:0005507GO:GO:0005524GO:GO:0005739GO:GO:0006457
GO:GO:0009408Gramene:AT1G14980.1hmmpanther:PTHR10772hmmpanther:PTHR10772:SF8
HOGENOM:HOG000133897InParanoid:P34893InterPro:IPR011032InterPro:IPR018369
InterPro:IPR020818iPTMnet:P34893KEGG:ath:AT1G14980KO:K04078
MINT:MINT-8058965OMA:EEYYLFRPANTHER:PTHR10772PaxDb:P34893
Pfam:P34893Pfam:PF00166PhylomeDB:P34893PIR:S65597
PRIDE:P34893PRINTS:PR00297PRO:PR:P34893PROSITE:PS00681
ProteinModelPortal:P34893Proteomes:UP000006548RefSeq:NP_563961.1scanprosite:PS00681
SMART:SM00883SMR:P34893STRING:3702.AT1G14980.1SUPFAM:SSF50129
TAIR:AT1G14980tair10-symbols:CPN10UniGene:At.295UniProt:P34893
Coordinates (TAIR10) chr1:-:5165930..5166654
Molecular Weight (calculated) 10813.20 Da
IEP (calculated) 7.69
GRAVY (calculated) -0.36
Length 98 amino acids
Sequence (TAIR10)
(BLAST)
1: MMKRLIPTFN RILVQRVIQP AKTESGILLP EKSSKLNSGK VIAVGPGSRD KDGKLIPVSV KEGDTVLLPE YGGTQVKLGE NEYHLFRDED VLGTLHED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)