AT1G14970.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.800 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : O-fucosyltransferase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G01480.1); Has 831 Blast hits to 817 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 831; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:5162085..5164917 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63411.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.93 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||
| Length | 562 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MISQVERDLS IQNRLPGSDH TTPSPPTSPH LCRSRSKSSS VSGQQQSRNV AHRLSWIILS VLLRRQGILL FAPIIYISCM LFHLHAASFD ASPIIHRRPA 101: PGSVYRSPQV YARLRGEIEA DNTTADAIST IWKRSYKGVE WKPCVNMSTG VLPVSNGFIF IEANGGLNQQ RTSICNAVAV AGYLNATLVI PNFHYHSIWK 201: DPSKFGDIYD EEYFIDTLAN DVRVVDTVPE YLMERFDYNL TNVYNFRVKA WAPTSYYRDS VLPKLLEEKV IRISPFANRL SFDAPRAVQR FRCLANNVAL 301: RFSKPILTQG ETLVNKMKGL SANNAGKYVS VHLRFEEDMV AFSCCVFDGG DQEKQDMIAA RERGWKGKFT KPGRVIRPGA NRLNGKCPLT PLEVGLMLRG 401: MGFNKSTYIF LAAGPIYSAN RTMAPLLEMF PNLQTKEMLA SEEDLAPFKN FSSRMAAIDY TVCLHSEVFV TTQGGNFPHF LMGHRRYLFG GHSKTIQPDK 501: RKLAVLFDNP KLGWKSFKRQ MLSMRSHSDS KGFELKRSSD SIYIFPCPDC MCRKNKTTAS AT |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)