suba logo
AT1G14900.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : high mobility group A
Curator
Summary (TAIR10)
Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA.
Computational
Description (TAIR10)
high mobility group A (HMGA); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, nucleosome assembly; LOCATED IN: cytosol, nuclear chromatin, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), High mobility group, HMG-I/HMG-Y (InterPro:IPR000116), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT3G18035.1); Has 1377 Blast hits to 1228 proteins in 223 species: Archae - 0; Bacteria - 119; Metazoa - 428; Fungi - 179; Plants - 544; Viruses - 9; Other Eukaryotes - 98 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZSYeggNOG:ENOG410YQM8EMBL:AC006917EMBL:AF041253EMBL:AK317240EMBL:AK319041EMBL:AY084355
EMBL:BT004806EMBL:CP002684EMBL:X99116EMBL:Y10836EnsemblPlants:AT1G14900EnsemblPlants:AT1G14900.1entrez:838055
Gene3D:1.10.10.10GeneID:838055Genevisible:Q43386GO:GO:0000786GO:GO:0003677GO:GO:0005634GO:GO:0005730
GO:GO:0006334GO:GO:0006355hmmpanther:PTHR11467hmmpanther:PTHR11467:SF29HOGENOM:HOG000005795IntAct:Q43386InterPro:IPR000116
InterPro:IPR005818InterPro:IPR011991InterPro:IPR017956InterPro:IPR031059KEGG:ath:AT1G14900OMA:MIMEAIDPANTHER:PTHR11467:SF29
PaxDb:Q43386Pfam:PF00538Pfscan:PS51504PRINTS:PR00929PRINTS:PR00930PROSITE:PS51504ProteinModelPortal:Q43386
Proteomes:UP000006548RefSeq:NP_172943.1SMART:SM00384SMART:SM00526SMR:Q43386STRING:3702.AT1G14900.1SUPFAM:SSF46785
TAIR:AT1G14900tair10-symbols:HMGAUniGene:At.5361UniProt:Q43386
Coordinates (TAIR10) chr1:-:5138665..5139353
Molecular Weight (calculated) 22012.30 Da
IEP (calculated) 10.64
GRAVY (calculated) -0.90
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)