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AT1G14850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:15496452 (2005): nucleus
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleoporin 155
Curator
Summary (TAIR10)
Encodes a protein similar to nucleoporin, a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport
Computational
Description (TAIR10)
nucleoporin 155 (NUP155); FUNCTIONS IN: nucleocytoplasmic transporter activity; INVOLVED IN: nucleocytoplasmic transport; LOCATED IN: nucleolus, plasma membrane, chloroplast, nuclear pore; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nup133/Nup155-like, N-terminal (InterPro:IPR014908), Nucleoporin, Nup155-like (InterPro:IPR004870), Nucleoporin, Nup133/Nup155-like, C-terminal (InterPro:IPR007187); Has 459 Blast hits to 396 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 168; Plants - 85; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Protein Annotations
BioGrid:23290eggNOG:COG5308eggNOG:KOG1900EMBL:AC006917EMBL:CP002684EnsemblPlants:AT1G14850EnsemblPlants:AT1G14850.1
entrez:838050GeneID:838050Genevisible:F4HXV6GO:GO:0005487GO:GO:0005643GO:GO:0005730GO:GO:0005886
GO:GO:0006913GO:GO:0009506GO:GO:0009507GO:GO:0015031GO:GO:0017056GO:GO:0051028Gramene:AT1G14850.1
hmmpanther:PTHR10350hmmpanther:PTHR10350:SF6HOGENOM:HOG000084151InParanoid:Q9LQU6InterPro:IPR004870InterPro:IPR014908iPTMnet:F4HXV6
KEGG:ath:AT1G14850KO:K14312OMA:DRCFPDLPANTHER:PTHR10350PaxDb:F4HXV6Pfam:F4HXV6Pfam:PF08801
PRIDE:F4HXV6PRO:PR:F4HXV6ProteinModelPortal:F4HXV6Proteomes:UP000006548RefSeq:NP_172938.2STRING:3702.AT1G14850.1TAIR:AT1G14850
tair10-symbols:NUP155UniGene:At.41950UniProt:F4HXV6
Coordinates (TAIR10) chr1:-:5116921..5123259
Molecular Weight (calculated) 160023.00 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.14
Length 1464 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSQDDEIVMR DVTSAGICIG DRIGREAASQ LDLEEALEAS RYASHPYSTH PREWPPLIEV GETWELPSVL IERYNTAGGE GTALCGIFPE IRRAWASVDN
0101: SLFLWRFDKR DGQCPEYSGE EQAICAVGLA KCRPGVFVEA IQYLLVLATP VELVLVGVCC TEGPDGRDPY AEISVQPLPD YTISSDGVTM TCVTCTNKGR
0201: IFMAGRDGHI YELLYTTGSG WNKRCRKVCL TAGVGSMISR WVVPNVFKFG AVDPVVEMVV DNERQILYAR TEEMKLQAYV SGPNGEGPLK KVAEERNLLN
0301: QKDLSQGNRQ SAVAGRSNKP SIVSISPLSM LESKWLHLVA ALSDGRRMYL STSSSGSGST ISFSGFNNHR QTPNCLKVVS TRPSPPLGVG VGLGFGAASV
0401: AGRTQNDDLS MKIETAYYSV GTLVLSDSSP PAMSSLLVVS RDSSVHSQAG SSSGPSSRSS RALREVVSSL PIEGRMLFVA DVLPSPDTAA TIQSLYSELE
0501: YCGVEVSGES YEKACGKLWA RSDLSTQHIL PRRKIVVFTT MGMMELVFNR PVDILRRLLE SNSPRSLLED FFTRFGVGEA AAMCLMLAAR IINFEDLISN
0601: IVADKAAEAF EDPRIVGMPQ FDGSSGLSNT RTATGGFSMG QVVQEAEPIF SGAHEGLCLC TSRLLFPLWE LPVMSKKTSS DTMSEDGVVI CRLSTSAMHV
0701: LESKIRSLEK FLRSRRNQRR GLYGCVAGLG DVTGSILYGT GSELGATERN MVRNLFGAYS NGGESANKRQ RLPYSPAELA ATEVRAMECI RQLLLRSAEA
0801: LFLLQLLSQH HVARLVQELD ANLKQALVQL TFHQLVCSEE GDQIATRLIS AVMEYYTGSD GRGTVDDISP RLREGCPSYF KESDYKFYLA VERLERAALT
0901: SDAEEKENVA REAFSFLSKV PGSADLQTVC KRFEDLRFYE AVVCLPLQKA QALDPAGDAF NDQLDASIRE HALAQRKQCY EIIANALRSL ASPLASPTLD
1001: EASRSQYICQ IVHLGVQSTD RAFREYLYKA MIELHLENEL LEYGGPDLVP FLQNAGSHSE SQVGAVSTGS SPLGHSGTQI SSDQAKYFDL LAKYYVSKRQ
1101: HVLAAHVFLR LAERRAISLG DSPTLERRRD DLSQAVLQAK NASNSDGLVG SAQGVSDSGL LDLLEGKLAV LQFQIKIRDK LEAIASNFES SVAMQDSDQN
1201: GQVLDGDSSD DTNLANAANE MAMEVSSELK SVTQLYNEYA VPFELWEICL EMLYFANYSG DADSSIIRET WARLIDQALS QGGIREACAV LKRVGSHIYP
1301: GDGVVLPLDV LCLHLERAAL ERSERIENVR DEDIAKALLA ACKGAAEPVL NAYDRLLSNA AVVPSPNLRI RLLRSVLVVL REWAMSVLSD RMGSSPTRSS
1401: LILGGSFALE NKAALNQGAR DKIANAANRY MTEVRRLALP PNKTDGVYAG FKELDESLLS PFSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)