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AT1G14830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DYNAMIN-like 1C
Curator
Summary (TAIR10)
Encodes a dynamin-like protein that is involved in mitochondrial morphogenesis and pollen development. Protein is localized as speckles in the cytoplasm, partially co-localizes with mitochondrial markers, cell plate of dividing cells, and the tip of root hairs, root cap cells, and expanding part of trichoblasts.
Computational
Description (TAIR10)
DYNAMIN-like 1C (DL1C); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: mitochondrial fission, pollen maturation, mitochondrion organization; LOCATED IN: cell cortex, plasma membrane, membrane, cell plate; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1E (TAIR:AT3G60190.1); Has 2810 Blast hits to 2715 proteins in 313 species: Archae - 2; Bacteria - 34; Metazoa - 1054; Fungi - 805; Plants - 579; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G14830-MONOMERBioGrid:23288eggNOG:COG0699eggNOG:KOG0446
EMBL:AC006917EMBL:AF180734EMBL:AF488808EMBL:AJ304841
EMBL:AY039955EMBL:AY085091EMBL:AY150494EMBL:CP002684
EnsemblPlants:AT1G14830EnsemblPlants:AT1G14830.1entrez:838048Gene3D:3.40.50.300
GeneID:838048Genevisible:Q8LF21GO:GO:0000266GO:GO:0003924
GO:GO:0005525GO:GO:0005737GO:GO:0005874GO:GO:0005886
GO:GO:0005938GO:GO:0007005GO:GO:0007049GO:GO:0009504
GO:GO:0009506GO:GO:0009524GO:GO:0010152GO:GO:0016020
GO:GO:0051301Gramene:AT1G14830.1hmmpanther:PTHR11566hmmpanther:PTHR11566:SF80
HOGENOM:HOG000161068InParanoid:Q8LF21IntAct:Q8LF21InterPro:IPR000375
InterPro:IPR001401InterPro:IPR003130InterPro:IPR019762InterPro:IPR020850
InterPro:IPR022812InterPro:IPR027417InterPro:IPR030381KEGG:ath:AT1G14830
OMA:EQEYFQSPANTHER:PTHR11566PaxDb:Q8LF21Pfam:PF00350
Pfam:PF01031Pfam:PF02212Pfam:Q8LF21Pfscan:PS51388
Pfscan:PS51718PhylomeDB:Q8LF21PRIDE:Q8LF21PRINTS:PR00195
PRO:PR:Q8LF21PROSITE:PS00410PROSITE:PS51388PROSITE:PS51718
ProteinModelPortal:Q8LF21Proteomes:UP000006548RefSeq:NP_172936.1scanprosite:PS00410
SMART:SM00053SMART:SM00302SMR:Q8LF21STRING:3702.AT1G14830.1
SUPFAM:SSF52540SwissPalm:Q8LF21TAIR:AT1G14830tair10-symbols:ADL1C
tair10-symbols:ADL5tair10-symbols:DL1Ctair10-symbols:DRP1CUniGene:At.10194
UniProt:Q8LF21
Coordinates (TAIR10) chr1:-:5107699..5111470
Molecular Weight (calculated) 68726.50 Da
IEP (calculated) 7.64
GRAVY (calculated) -0.36
Length 614 amino acids
Sequence (TAIR10)
(BLAST)
001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)