suba logo
AT1G14650.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.863
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626), Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1); Has 37228 Blast hits to 22919 proteins in 1210 species: Archae - 39; Bacteria - 4240; Metazoa - 16399; Fungi - 5145; Plants - 6055; Viruses - 891; Other Eukaryotes - 4459 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPNWeggNOG:KOG0007EMBL:AC010657EMBL:AK226440EMBL:AY081293EMBL:CP002684EnsemblPlants:AT1G14650
EnsemblPlants:AT1G14650.1EnsemblPlants:AT1G14650.2entrez:838027EvolutionaryTrace:Q8RXF1GeneID:838027Genevisible:Q8RXF1GO:GO:0000398
GO:GO:0003723GO:GO:0005684Gramene:AT1G14650.1Gramene:AT1G14650.2hmmpanther:PTHR15316hmmpanther:PTHR15316:SF1HOGENOM:HOG000238941
InParanoid:Q8RXF1IntAct:Q8RXF1InterPro:IPR000061InterPro:IPR000626InterPro:IPR022030InterPro:IPR029071iPTMnet:Q8RXF1
KEGG:ath:AT1G14650KO:K12825ncoils:CoilOMA:GPARINVPaxDb:Q8RXF1PDB:1WE6PDBsum:1WE6
Pfam:PF00240Pfam:PF01805Pfam:PF12230Pfam:Q8RXF1Pfscan:PS50053Pfscan:PS50128PhylomeDB:Q8RXF1
PIR:G86280PRIDE:Q8RXF1PRO:PR:Q8RXF1PROSITE:PS50053PROSITE:PS50128ProteinModelPortal:Q8RXF1Proteomes:UP000006548
RefSeq:NP_001117289.1RefSeq:NP_172917.1SMART:SM00213SMART:SM00648SMR:Q8RXF1STRING:3702.AT1G14650.1SUPFAM:SSF109905
SUPFAM:SSF54236TAIR:AT1G14650UniGene:At.22146UniProt:Q8RXF1
Coordinates (TAIR10) chr1:+:5028077..5030520
Molecular Weight (calculated) 87599.20 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.75
Length 785 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)