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AT1G14610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : valyl-tRNA synthetase / valine--tRNA ligase (VALRS)
Curator
Summary (TAIR10)
Required for proper proliferation of basal cells.
Computational
Description (TAIR10)
TWIN 2 (TWN2); FUNCTIONS IN: valine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Valyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR019754); BEST Arabidopsis thaliana protein match is: ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (TAIR:AT5G16715.1); Has 39194 Blast hits to 36732 proteins in 3122 species: Archae - 839; Bacteria - 19755; Metazoa - 1534; Fungi - 892; Plants - 369; Viruses - 3; Other Eukaryotes - 15802 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G14610-MONOMERBioGrid:23263BRENDA:6.1.1.9EC:6.1.1.9
eggNOG:COG0525eggNOG:KOG0432EMBL:AC010657EMBL:AY062693
EMBL:BT010735EMBL:CP002684EMBL:U89986EMBL:U93308
EnsemblPlants:AT1G14610EnsemblPlants:AT1G14610.1entrez:838023Gene3D:1.10.730.10
Gene3D:3.40.50.620Gene3D:3.90.740.10GeneID:838023Genevisible:P93736
GO:GO:0002161GO:GO:0004832GO:GO:0005524GO:GO:0005739
GO:GO:0005829GO:GO:0006438GO:GO:0009507GO:GO:0009793
Gramene:AT1G14610.1gramene_pathway:6.1.1.9gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_02004
hmmpanther:PTHR11946hmmpanther:PTHR11946:SF5HOGENOM:HOG000020094InParanoid:P93736
InterPro:IPR001412InterPro:IPR002300InterPro:IPR002303InterPro:IPR009008
InterPro:IPR009080InterPro:IPR013155InterPro:IPR014729KEGG:00970+6.1.1.9
KEGG:ath:AT1G14610KO:K01873ncoils:CoilOMA:FGWPNQS
PANTHER:PTHR11946:SF5PaxDb:P93736Pfam:P93736Pfam:PF00133
Pfam:PF08264PhylomeDB:P93736PIR:F86280PRIDE:P93736
PRINTS:PR00986PRO:PR:P93736PROSITE:PS00178ProteinModelPortal:P93736
Proteomes:UP000006548RefSeq:NP_172913.1scanprosite:PS00178SMR:P93736
STRING:3702.AT1G14610.1SUPFAM:SSF47323SUPFAM:SSF50677SUPFAM:SSF52374
TAIR:AT1G14610tair10-symbols:TWN2tair10-symbols:VALRSTIGRfam:TIGR00422
TIGRFAMs:TIGR00422UniGene:At.16600UniProt:P93736
Coordinates (TAIR10) chr1:-:5008502..5014486
Molecular Weight (calculated) 125933.00 Da
IEP (calculated) 7.10
GRAVY (calculated) -0.43
Length 1108 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSLLFLRRAK PLFVSCCSAT HSRSSFLSPT LTNQLVRSFH GSRTMSESEK KILTEEELER KKKKEEKAKE KELKKQKALE KERLAELKAK QAKDGTNVPK
0101: KSAKKSSKRD ASEENPEDFV DPETPLGERK RLSSQMAKQY SPATVEKSWY AWWEKSDLFK ADAKSSKPPF VIVLPPPNVT GALHIGHALT SAIEDTIIRW
0201: KRMSGYNALW VPGVDHAGIA TQVVVEKKIM RDRGMTRHDV GREEFVKEVW KWKNQYGGTI LTQLRRLGAS LDWSRECFTM DEQRSKAVTE AFVRLYKEGL
0301: IYRDIRLVNW DCILRTAISD VEVEYIDIKE KTLLKVPGYE KPVEFGLLTS FAYPLEGGLG EVIVATTRVE TMLGDTAIAI HPDDARYKHL HGKFAVHPFN
0401: GRKLPIICDG ILVDPNFGTG CVKITPAHDP NDCEVGKRHK LEFINIFTDD GKINTNGGSD FAGMPRFAAR EAVVEALQKQ GLYRGAKNNE MRLGLCSRTN
0501: DVIEPMIKPQ WYVNCSMIGK EALDVAITDE NKKLEFVPKQ YTAEWRRWLE NIRDWCISRQ LWWGHRIPAW YATLEEDQLK EVGAYSDHWV VARTEDDARE
0601: EAAQKFLGKK FELTRDPDVL DTWFSSGLFP LSVLGWPDVT DDFKAFYPTS VLETGHDILF FWVARMVMMG MKLGGEVPFS KVYFHPMIRD AHGRKMSKSL
0701: GNVIDPLEVI NGVTLEGLHK RLEEGNLDPK EVIVAKEGQV KDFPNGIPEC GTDALRFALV SYTAQSDKIN LDILRVVGYR QWCNKLWNAV RFAMMKLGDG
0801: YTPPQTLSPE TMPFSCQWIL SVLNKAISKT VVSLDAFEFS DAANTIYAWW QYQFCDVYIE AIKPYFAGDN PTFASERAHA QHALWISLET GLRLLHPFMP
0901: FVTEELWQRL PAPKDTERKA SIMICDYPSA IENWSNEKVE SEMDTVLATV KCMRALRAGL LEKQKNERLP AFALCENNVT SEIVKSHELE IRTLANLSSL
1001: EVVSKGQHAA PPGSSVETVN ENLKVYLEVD GAINTEAEQE KIRNKIGELQ KQKEKLQKMM SVSTYEEKVP ANIKEDNANK LAKILQEFDF FEKESARLAA
1101: ETSNSGNQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)