suba logo
AT1G14540.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G14550.1); Has 4581 Blast hits to 4555 proteins in 302 species: Archae - 0; Bacteria - 6; Metazoa - 19; Fungi - 179; Plants - 4302; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G14540-MONOMEREC:1.11.1.7eggNOG:ENOG410IVKBeggNOG:ENOG410ZJEXEMBL:AC010657EMBL:AC012188EMBL:CP002684
EnsemblPlants:AT1G14540EnsemblPlants:AT1G14540.1entrez:838016GeneID:838016Genevisible:Q9LE15GO:GO:0004601GO:GO:0005576
GO:GO:0006979GO:GO:0020037GO:GO:0042744GO:GO:0046872GO:GO:0071456Gramene:AT1G14540.1hmmpanther:PTHR31388
hmmpanther:PTHR31388:SF37HOGENOM:HOG000237557InParanoid:Q9LE15InterPro:IPR000823InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793
InterPro:IPR019794KEGG:00940+1.11.1.7KEGG:ath:AT1G14540KO:K00430OMA:SSMQCHAPaxDb:Q9LE15PeroxiBase:80
Pfam:PF00141Pfam:Q9LE15Pfscan:PS50873PhylomeDB:Q9LE15PRIDE:Q9LE15PRINTS:PR00458PRINTS:PR00461
PRO:PR:Q9LE15PROSITE:PS00435PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:Q9LE15Proteomes:UP000006548RefSeq:NP_172906.1
scanprosite:PS00435scanprosite:PS00436SMR:Q9LE15STRING:3702.AT1G14540.1SUPFAM:SSF48113TAIR:AT1G14540UniGene:At.41966
UniProt:Q9LE15
Coordinates (TAIR10) chr1:-:4974233..4975600
Molecular Weight (calculated) 34412.80 Da
IEP (calculated) 7.87
GRAVY (calculated) -0.15
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIFKILVLL LSLCCFSQAQ LSPTFYDQTC QNALSTIRSS IRTAISRERR MAASLIRLHF HDCFVNGCDA SVMLVATPTM ESERDSLANF QSARGFEVID
101: QAKSAVESVC PGVVSCADII AVAARDASEY VGGPRYDVKV GRRDSTNAFR AIADRDLPNF RASLNDLSEL FLRKGLNTRD LVALSGAHTL GQAQCLTFKG
201: RLYDNSSDID AGFSSTRKRR CPVNGGDTTL APLDQVTPNS FDNNYYRNLM QKKGLLESDQ VLFGTGASTD SIVTEYSRNP SRFASDFSAA MIKMGDIQTL
301: TGSDGQIRRI CSAVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)