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AT1G14490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Predicted AT-hook DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Predicted AT-hook DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT5G49700.1); Has 747 Blast hits to 743 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 747; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB493457EMBL:AC012188EMBL:BR000364EMBL:BT029503EMBL:CP002684EnsemblPlants:AT1G14490EnsemblPlants:AT1G14490.1
entrez:838011GeneID:838011Genevisible:Q9M9R4GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT1G14490.1hmmpanther:PTHR31100hmmpanther:PTHR31100:SF1HOGENOM:HOG000239043InterPro:IPR005175InterPro:IPR014476KEGG:ath:AT1G14490
OMA:VTIDPPMPaxDb:Q9M9R4Pfam:PF03479Pfam:Q9M9R4Pfscan:PS51742PhylomeDB:Q9M9R4PIR:G86279
PIRSF:PIRSF016021PRO:PR:Q9M9R4PROSITE:PS51742ProteinModelPortal:Q9M9R4Proteomes:UP000006548RefSeq:NP_172901.1SUPFAM:SSF117856
TAIR:AT1G14490TMHMM:TMhelixUniGene:At.49445UniProt:Q9M9R4
Coordinates (TAIR10) chr1:-:4958705..4959325
Molecular Weight (calculated) 21460.40 Da
IEP (calculated) 7.41
GRAVY (calculated) -0.16
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: METVGRPRGR PRGSKNKPKA PIFVTIDPPM SPYILEVPSG NDVVEALNRF CRGKAIGFCV LSGSGSVADV TLRQPSPAAP GSTITFHGKF DLLSVSATFL
101: PPLPPTSLSP PVSNFFTVSL AGPQGKVIGG FVAGPLVAAG TVYFVATSFK NPSYHRLPAT EEEQRNSAEG EEEGQSPPVS GGGGESMYVG GSDVIWDPNA
201: KAPSPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)