AT1G14460.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : AAA-type ATPase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, DNA-directed DNA polymerase activity, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G02480.1); Has 16118 Blast hits to 16088 proteins in 2833 species: Archae - 487; Bacteria - 9881; Metazoa - 404; Fungi - 514; Plants - 302; Viruses - 52; Other Eukaryotes - 4478 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:4948962..4952750 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 124898.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1116 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSGLRISDPS KLHLKKELTH IRKVASKGLR DPGTTSSWKS PLTSSRFVVE PPASNNVEIL SNNQLDSQFP SSRVFGNNGK EKEKKVFLYN WKTQRTSSEK 0101: TEGEDETSWI QASLNDDDDD DDDVSDARNG GDSCLEETRS ASMIRKSGFI KKKSKELDLS IGRKSTAKAR NFPSHHLHVA SGLSVVRDES DETEDFSNSE 0201: NFPTKVSSPL LLKLKRKNWS RSSSKFLRGT SKREDSSHTC NSTPALSTSS YNMYGIRNPS TVGSWEDGDD ELDDDNLDFK GRQGCGIPFY WTKRNLKHRG 0301: GCRSCCSPSF SDTLRRKGSS ILCGSQSVYR RHRHSSGRFN KQKLALRSAK GVLPLLKYGG DSRGGSSIGI GYSDDDLSTD FGEIDLEAQS RLDGRRWSSC 0401: CKSQDGEREE EEEGGSTPES IQSLSQKYKP MFFDELIGQS IVVQSLMNAV KKGRVAHVYL FQGPRGTGKT STARILSAAL NCDVVTEEMK PCGYCKECSD 0501: YMLGKSRDLL ELDAGKKNGA EKVRYLLKKL LTLAPQSSQR YKVFVIDECH LLPSRTWLSL LKFLENPLQK FVFVCITTDL DNVPRTIQSR CQKYIFNKVR 0601: DGDIVVRLRK IASDENLDVE SQALDLIALN ADGSLRDAET MLEQLSLMGK RITVDLVNEL VGVVSDDKLL ELLELALSSD TAETVKKARE LLDLGADPIL 0701: MMSQLASLIM DIIAGAYKAL DEKYSEAFLD RRNLTEADLE RLKHALKLLS EAEKQLRVST DRSTWFIATL LQLGSMPSPG TTHTGSSRRQ SSRATEESIS 0801: REVIAYKQRS GLQCSNTASP TSIRKSGNLV REVKLSSSSS EVLESDTSMA SHDDTTASTM TLTCRNSEKL NDIWIKCVDR CHSKTLKQLL YAHGKLLSIS 0901: EVEGILVAYI AFGEGEIKAR AERFVSSITN SIEMVLRRNV EVRIILLSET ELLNSKQTRQ IAVTTSSYTE SGNEIPMKRI EAIIQEQRLE TEWLQKTPGS 1001: QGRLKPERNQ ILPQEDTNGV KVLKICEMGE FQENQSGKRM EHCPVSPSLL HNSNFTNNKD NLGYESESGR GVCSLLFCWN TQKSPRRTKI KGTSMRSRRS 1101: RERRFSLFSA CARPRK |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)