suba logo
AT1G14420.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectate lyase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT59; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT2G02720.1); Has 1736 Blast hits to 1725 proteins in 285 species: Archae - 2; Bacteria - 722; Metazoa - 0; Fungi - 281; Plants - 703; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G14420-MONOMERCAZy:PL1EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410II3GEMBL:AC012188EMBL:BT010451
EMBL:CP002684EMBL:U83619EnsemblPlants:AT1G14420EnsemblPlants:AT1G14420.1entrez:838004ExpressionAtlas:Q9M9S2Gene3D:2.160.20.10
GeneID:838004Genevisible:Q9M9S2GO:GO:0009664GO:GO:0030570GO:GO:0045490GO:GO:0046872Gramene:AT1G14420.1
hmmpanther:PTHR31683hmmpanther:PTHR31683:SF7HOGENOM:HOG000237948InParanoid:Q9M9S2InterPro:IPR002022InterPro:IPR007524InterPro:IPR011050
InterPro:IPR012334InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT1G14420KO:K01728OMA:CADGMIDPaxDb:Q9M9S2
Pfam:PF00544Pfam:PF04431Pfam:Q9M9S2PhylomeDB:Q9M9S2PIR:G86278PRIDE:Q9M9S2PRINTS:PR00807
PRO:PR:Q9M9S2ProteinModelPortal:Q9M9S2Proteomes:UP000006548RefSeq:NP_172894.1SMART:SM00656SMR:Q9M9S2STRING:3702.AT1G14420.1
SUPFAM:SSF51126TAIR:AT1G14420tair10-symbols:AT59TMHMM:TMhelixUniGene:At.41974UniPathway:UPA00545UniProt:Q680M0
UniProt:Q9M9S2
Coordinates (TAIR10) chr1:-:4931844..4933405
Molecular Weight (calculated) 51457.40 Da
IEP (calculated) 9.46
GRAVY (calculated) -0.39
Length 459 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)