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AT1G14410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26987276 (2016): plastid
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ssDNA-binding transcriptional regulator
Curator
Summary (TAIR10)
Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.
Computational
Description (TAIR10)
WHIRLY 1 (WHY1); FUNCTIONS IN: DNA binding, telomeric DNA binding; INVOLVED IN: negative regulation of telomere maintenance via telomerase, defense response; LOCATED IN: plastid chromosome, chloroplast, nucleoid, telomerase holoenzyme complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT2G02740.2); Has 106 Blast hits to 105 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFH8eggNOG:ENOG41124UZEMBL:AC012188EMBL:AF332452EMBL:AF370156EMBL:AY059097EMBL:CP002684
EnsemblPlants:AT1G14410EnsemblPlants:AT1G14410.1entrez:838003Gene3D:2.30.31.10GeneID:838003Genevisible:Q9M9S3GO:GO:0003677
GO:GO:0003697GO:GO:0006281GO:GO:0006351GO:GO:0006355GO:GO:0006952GO:GO:0009295GO:GO:0009507
GO:GO:0009508GO:GO:0032211GO:GO:0042162Gramene:AT1G14410.1hmmpanther:PTHR31745hmmpanther:PTHR31745:SF2HOGENOM:HOG000006196
InParanoid:Q9M9S3InterPro:IPR009044InterPro:IPR013742KEGG:ath:AT1G14410OMA:WHAYANAPaxDb:Q9M9S3PDB:4KOO
PDBsum:4KOOPfam:PF08536Pfam:Q9M9S3PhylomeDB:Q9M9S3PIR:F86278PRIDE:Q9M9S3PRO:PR:Q9M9S3
ProteinModelPortal:Q9M9S3Proteomes:UP000006548RefSeq:NP_172893.1SMR:Q9M9S3STRING:3702.AT1G14410.1SUPFAM:SSF54447TAIR:AT1G14410
tair10-symbols:ATWHY1tair10-symbols:PTAC1tair10-symbols:WHY1UniGene:At.12043UniProt:Q9M9S3
Coordinates (TAIR10) chr1:-:4929352..4930810
Molecular Weight (calculated) 29059.60 Da
IEP (calculated) 9.88
GRAVY (calculated) -0.21
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQLLSTPLM AVNSNPRFLS SSSVLVTGGF AVKRHGFALK PTTKTVKLFS VKSRQTDYFE KQRFGDSSSS PSPAEGLPAR FYVGHSIYKG KAALTVDPRA
101: PEFVALDSGA FKLSKDGFLL LQFAPSAGVR QYDWSKKQVF SLSVTEIGTL VSLGPRESCE FFHDPFKGKS DEGKVRKVLK VEPLPDGSGH FFNLSVQNKL
201: VNVDESIYIP ITRAEFAVLI SAFNFVLPYL IGWHAFANSI KPEETSRVNN ASPNYGGDYE WNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)