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AT1G14380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytoskeleton
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : IQ-domain 28
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 29 (TAIR:AT2G02790.1); Has 6802 Blast hits to 5296 proteins in 468 species: Archae - 2; Bacteria - 474; Metazoa - 2682; Fungi - 509; Plants - 1003; Viruses - 37; Other Eukaryotes - 2095 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWA3eggNOG:ENOG411054HEMBL:AK117145EMBL:BT005935EMBL:CP002684EnsemblPlants:AT1G14380EnsemblPlants:AT1G14380.1
EnsemblPlants:AT1G14380.3entrez:838000ExpressionAtlas:Q8GZ87GeneID:838000GO:GO:0005875GO:GO:0005886Gramene:AT1G14380.1
Gramene:AT1G14380.3hmmpanther:PTHR32295hmmpanther:PTHR32295:SF14InterPro:IPR000048InterPro:IPR025064KEGG:ath:AT1G14380OMA:RRSSIGC
Pfam:PF00612Pfam:PF13178Pfscan:PS50096PhylomeDB:Q8GZ87PROSITE:PS50096Proteomes:UP000006548RefSeq:NP_001031046.1
RefSeq:NP_563950.1SMART:SM00015STRING:3702.AT1G14380.1TAIR:AT1G14380tair10-symbols:IQD28UniGene:At.48188UniGene:At.70085
UniProt:Q8GZ87
Coordinates (TAIR10) chr1:-:4918279..4920761
Molecular Weight (calculated) 72852.60 Da
IEP (calculated) 10.06
GRAVY (calculated) -0.88
Length 664 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKTPGKWIK TLLLGKKSPK SNSDNRSQKL KSAKKEELVE SVTEDLSNLT VDPPVVSSQP VPASTAQNVV SPINGDESKD NLESRNDLGE VELEQAAIKV
101: QATFRAHQAR RAFRTLKGII RLQAVIRGHL VRRQAIATYS CIWGIVKFQA LVRGQKARSS DIAIQFQKKH MEASDSEVLQ SSTCSWMDNP TKFVFVDKLL
201: ASSPTALPLK IQYGPEEPNS AKVWLERWTQ LQVWSSGSRV PRIEIPKSQS KKRNYQAVVE AEKKRPKRSI KKPSGTTSGT GPSRFTAERN KPKRNVRKAS
301: TLSKDPLRNE SDKANHNSRK SRSGSKEGSP LEIKDEKPSP SLKRSSLSNG SKKATLRSAE KKKKDIPDSS VQIQPEGKVS ENVLEGGDNI EFAEKEKDTT
401: DSVQIESEGK VSGNVLEGGE GENIVFTEKE KDTADPVQIE PERKVLEEGD NIESSGKEKD TGDSVQIESE GKVLEGGDNI EFGEKEKDKA DAVPIEFDIV
501: KDEKSPVLDR TEEDELKTAE TSDKAEALKC ADVKVSSENG NVGSDNTKQS EKRALLPANI DKQDDGLTLS GRKIPSYMAP TASAKARVKG EASPRFAQAK
601: TEINGALRRH SLPSPANGKL STTTMSPRAQ KLLLASAKGS MNGDKSFTSS KDITHKSTRT DWKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)