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AT1G14345.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-linked oxidoreductase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); Has 297 Blast hits to 297 proteins in 86 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWYPeggNOG:ENOG4111P59EMBL:AK220597EMBL:AY050917EMBL:AY085870EMBL:AY113966EMBL:CP002684
EnsemblPlants:AT1G14345EnsemblPlants:AT1G14345.1entrez:837996GeneID:837996GO:GO:0009507GO:GO:0009534GO:GO:0009535
GO:GO:0016020GO:GO:0016021Gramene:AT1G14345.1hmmpanther:PTHR35688hmmpanther:PTHR35688:SF2HOGENOM:HOG000233072InterPro:IPR005182
KEGG:ath:AT1G14345OMA:FKEIADHPfam:PF03703PhylomeDB:Q949S6Proteomes:UP000006548RefSeq:NP_563947.1STRING:3702.AT1G14345.1
TAIR:AT1G14345TMHMM:TMhelixUniGene:At.26548UniProt:Q949S6
Coordinates (TAIR10) chr1:+:4899176..4899766
Molecular Weight (calculated) 21224.70 Da
IEP (calculated) 10.39
GRAVY (calculated) 0.11
Length 196 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASSSIPPS TAVTSVVRKS LLLSTTFSFP ASSLSPSTKL PQRHIQRLLL ASSSASASTV PSDSKPAKKE TVYFDGGAHY GDLLANLILG LTILWLPLTL
101: AAVSRAFNLR YRFTNLRVTV ISGLTGDDRS DFSYKVIKDV QVVPRFIGEW GDIIITLKDG TKVDLRSVPK FREIAKYCLS MADQPAVLKE SGAKGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)