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AT1G13990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AF385724EMBL:AY088727EMBL:AY133672EMBL:CP002684EnsemblPlants:AT1G13990EnsemblPlants:AT1G13990.1entrez:837959
ExpressionAtlas:Q94F46GeneID:837959Gramene:AT1G13990.1hmmpanther:PTHR37178hmmpanther:PTHR37178:SF1HOGENOM:HOG000149141IntAct:Q94F46
PhylomeDB:Q94F46Proteomes:UP000006548RefSeq:NP_563935.1TAIR:AT1G13990UniGene:At.25035UniProt:Q94F46
Coordinates (TAIR10) chr1:+:4794810..4796476
Molecular Weight (calculated) 30891.60 Da
IEP (calculated) 8.98
GRAVY (calculated) -0.62
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MESLTSISPS IILPPATTTT IPVSTSRSVL IRLPSRRSSY LFGLSSSGRR ISISRRRHFV SCKSTGGGGG GSDKLGGDEE ESEEVEKALH LDGTIPGTSD
101: EFVRQVSSRA YDMRRKLEQT FDSTSYDVLE SNPWRGDSKP VYVLTHRENQ ICTMKTRTNH SEVEKELGLL FPSRISNQTK QARPKTKFDM LVEDIRDGVL
201: VFEDVNEAVR YCDLLQGGGK GCEGVAEIEA SSVFDLCRKT RSLAVLFRRG RTPPTPQTLE RNLGSRKRSL EDLRDNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)