AT1G13970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1336) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1336); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT3G29180.2); Has 292 Blast hits to 292 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 248; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4779742..4781882 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57596.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.28 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||
| Length | 504 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGCVSSQRK LSNKLQQKKQ KRGRSGKCRS KISASMPDVP MKRMSNASVR DFAVSEYVHL DFDNCAAKMM CKRAEMSNAN FHLTQLQWNC SQIDGNRISH 101: EEAWYDSFSY IDSDSDDGSN SSVFEDANAS AMGQVIQYEE FYESYLKIDG NKGETYSSKN EVSIKRNQVA DESHHETFKT TTCEDHQDHR KKSSKVVMVS 201: VRRTSIDSKS TPSEFSSAEK LLYRPKAGSM IQRSLGEKMT SQGSWSEVSP SSFKLRGLNF FRDKQKCPAP NCSPYIPIGV DLFACPKKIN HIAQHIELPN 301: LKPASSQVCD IPNLLIVNIQ LPMYPTSMFG DYDGEGLSLV LYFKRNENYH KEISSHFKET IKRFMEDEME KVKGFTREST VPFRERLKIM AGLVNPEDFQ 401: LSSTERKLIT AYNDRPVLSR PQHDFFQGPN YFEIDLDIHR FSYISRKGLE SFRDRIKNGI LDLGLTIQAQ SPEELPEQVL CCVRLNKIDF VNHGQIPTLL 501: TNKQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)