AT1G13940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF863) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF863); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 222 Blast hits to 202 proteins in 28 species: Archae - 0; Bacteria - 4; Metazoa - 12; Fungi - 2; Plants - 194; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4762703..4765923 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 112944.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.25 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||
| Length | 1005 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGTKVHCESL FGGYHHSMGD LNKESNNGCR WPLFYGDNKT SASNNDQCYN NGFTSQTTFG FDKDVVRRTM LEHEAVFKTQ VLELHRVYRT QKDMMDELKR 0101: KQFNKEWVQI EASLSSQATN DDVRKWKIPS FPLANSVYDR PSMSVVEDNG HSPMKGSNSQ GPVSWQNGAS SKSVEVSEVR PTKIRRKMID LCLPADEYID 0201: DNEEVVELKD HRVCSTSSQL PNGDVKTESR IDGVRIGYGS SRSNGLADLN EPVDAQEANE FAYGHSRDLR NGEFQGHIRD YGKSLNSGSV REHIPVIPLQ 0301: PDLNGKPKVW SHQPLRTDHY NGTHKSAAPF FQPAKPLDSL SQPMQVLMNS SQRVMSLPNS GPPSKAVVWR ERTFIDLEAD TDTNSSHEAV IHQNHLDSSL 0401: TSHQQRPLYP YIRPDSAVSW NHLHSSWQNP SFGFPQKVAS AQRYPVLNMS DTLIGNAQKQ GYLGDRLQFE SNSRFDSGCG NSSRLNHNMF YNECSTSSKS 0501: KVAGTGYNYP NGGRSDYSSE RKFVRDLNLN VTLSNTSVVE VRKDEEHLAT LPWLNKPKSV CNSELADGKW SLKSNDAVPS SSLKPLDIRD EAGDKVQNIM 0601: WLERLKSGSC SNNPVTEKID ANKEIPGLAY KDQSNVEKGK VHYVRMLDMN EPCDPLWDED QQTEEQTETR VSASNRCQID LNILGSDDEG ENCSVPASSR 0701: LNSKAPMIDL ETVPESDDEE EDGNISGEKR SEVKSIEEKT LEKPPEFEKL AAETIVAIYS ACLDREVEVV ASSEVSETII LHWFAETVNT HKENLDKKLD 0801: TFSRNQSRSI EDIDYFESMT LQLPDISEQE YMPKPLVPEN LKLEETTGTA LVTSQRPRRG NARKGKQRRD FQRDILPGLL SLSKHEVTED IQMFDGFMRA 0901: TGRSWTPTGL TRKKTGSRGR PRRAITIPAE PVYCPVPAPA PPPPSVQQHV SNQSNNGETE MCLEDRSFAG WGKMTRRPRR QRCPSASTTT ATTSNQRSSS 1001: HAPFT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)