suba logo
AT1G13930.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress.
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: chloroplast, chloroplast stroma, plasma membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: nodulin-related protein 1 (TAIR:AT2G03440.1); Has 64 Blast hits to 64 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JJAReggNOG:ENOG410ZUS9EMBL:AC007576EMBL:AC068197EMBL:AY045640EMBL:AY058230EMBL:CP002684
EnsemblPlants:AT1G13930EnsemblPlants:AT1G13930.1EnsemblPlants:AT1G13930.2EnsemblPlants:AT1G13930.3entrez:837953GeneID:837953GO:GO:0005886
GO:GO:0009507GO:GO:0009570GO:GO:0009651GO:GO:0009735GO:GO:0009941GO:GO:0046686Gramene:AT1G13930.1
Gramene:AT1G13930.2Gramene:AT1G13930.3hmmpanther:PTHR35098hmmpanther:PTHR35098:SF1IntAct:Q9XI93KEGG:ath:AT1G13930OMA:YLKEFSA
PhylomeDB:Q9XI93PIR:D86272ProMEX:Q9XI93Proteomes:UP000006548RefSeq:NP_001184989.1RefSeq:NP_001184990.1RefSeq:NP_563934.1
STRING:3702.AT1G13930.1TAIR:AT1G13930UniGene:At.22637UniGene:At.25532UniGene:At.67684UniProt:Q9XI93
Coordinates (TAIR10) chr1:+:4761091..4761558
Molecular Weight (calculated) 16164.40 Da
IEP (calculated) 4.55
GRAVY (calculated) -0.88
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFISDQVKK LSSSTPEEPD HNKPVEGTET ATRPATNAEL MASAKVVAEA AQAAARNESD KLDKGKVAGA SADILDAAEK YGKFDEKSST GQYLDKAEKY
101: LNDYESSHST GAGGPPPPTS QAEPASQPEP AAKKDDEESG GGLGGYAKMA QGFLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)