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AT1G13900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plastid 15028209
SwissProt : extracellular 16381842
TAIR : plastid 15028209
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Purple acid phosphatases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Purple acid phosphatases superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 9 (TAIR:AT2G03450.1); Has 1738 Blast hits to 1720 proteins in 355 species: Archae - 1; Bacteria - 507; Metazoa - 197; Fungi - 77; Plants - 727; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G13900-MONOMERBioGrid:23189eggNOG:COG1409eggNOG:KOG1378EMBL:AC068197EMBL:AY842028EMBL:CP002684
EnsemblPlants:AT1G13900EnsemblPlants:AT1G13900.1entrez:837949Gene3D:2.60.40.380Gene3D:3.60.21.10GeneID:837949Genevisible:Q9LMG7
GO:GO:0003993GO:GO:0005576GO:GO:0005739GO:GO:0005740GO:GO:0005768GO:GO:0005794GO:GO:0005802
GO:GO:0006109GO:GO:0006626GO:GO:0009507GO:GO:0009941GO:GO:0016311GO:GO:0030943GO:GO:0045040
GO:GO:0046872Gramene:AT1G13900.1hmmpanther:PTHR22953hmmpanther:PTHR22953:SF46HOGENOM:HOG000242102InParanoid:Q9LMG7InterPro:IPR004843
InterPro:IPR008963InterPro:IPR015914InterPro:IPR025733InterPro:IPR029052KEGG:ath:AT1G13900OMA:PWKPWWAPaxDb:Q9LMG7
Pfam:PF00149Pfam:PF14008Pfam:PF16656Pfam:Q9LMG7PhylomeDB:Q9LMG7PRIDE:Q9LMG7PRO:PR:Q9LMG7
ProteinModelPortal:Q9LMG7Proteomes:UP000006548RefSeq:NP_172843.1SMR:Q9LMG7STRING:3702.AT1G13900.1SUPFAM:SSF49363SUPFAM:SSF56300
TAIR:AT1G13900TMHMM:TMhelixUniGene:At.42002UniProt:Q9LMG7
Coordinates (TAIR10) chr1:-:4753494..4755554
Molecular Weight (calculated) 73721.00 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.36
Length 656 amino acids
Sequence (TAIR10)
(BLAST)
001: MIVNFSFFLL LFVSVFVSSA DSKATISISP NALNRSGDSV VIQWSGVDSP SDLDWLGLYS PPESPNDHFI GYKFLNESST WKDGFGSISL PLTNLRSNYT
101: FRIFRWSESE IDPKHKDHDQ NPLPGTKHLL AESEQLTFGS GVGMPEQIHL SFTNMVNTMR VMFVAGDGEE RFVRYGESKD LLGNSAAARG MRYEREHMCD
201: SPANSTIGWR DPGWIFDTVM KNLNDGVRYY YQVGSDSKGW SEIHSYIARD VTAEETVAFM FGDMGCATPY TTFIRTQDES ISTVKWILRD IEALGDKPAM
301: ISHIGDISYA RGYSWVWDEF FAQVEPIAST VPYHVCIGNH EYDFSTQPWK PDWAASIYGN DGGGECGVPY SLKFNMPGNS SESTGMKAPP TRNLYYSYDM
401: GTVHFVYIST ETNFLKGGSQ YEFIKRDLES VDRKKTPFVV VQGHRPMYTT SNEVRDTMIR QKMVEHLEPL FVKNNVTLAL WGHVHRYERF CPISNNTCGT
501: QWQGNPVHLV IGMAGQDWQP IWQPRPNHPD LPIFPQPEQS MYRTGEFGYT RLVANKEKLT VSFVGNHDGE VHDTVEMLAS GVVISGSKES TKIPNLKTVP
601: ASATLMGKSE SNALWYAKGA GLMVVGVLLG FIIGFFTRGK KSSSGNRWIP VKNEET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)