AT1G13800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G26790.1); Has 64040 Blast hits to 14329 proteins in 287 species: Archae - 5; Bacteria - 54; Metazoa - 543; Fungi - 727; Plants - 60798; Viruses - 0; Other Eukaryotes - 1913 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4731056..4733707 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100525.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 883 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRVFPIPLLS HVRGLIRQGP SSRFYVVPAL ARTNLTISHS EQVKEGTFDY KALELNDIGV LRVLNSMKDD PYLALSFLKR IEGNVTLPSV QAYATVIRIV 101: CGWGLDKKLD TFLFELVRRG DEGRGFSVMD LLKAIGEMEQ SLVLLIRVST ALVKAYANLD MFDEAIDIFF RAYYSLGRAP DIKALNFLIS RMIASGRSDM 201: VVGFFWEIER LGLDADAHTY VLVVQALWRN DDKEELEKLL SRLLISETRN PCVFYLNFIE GLCLNQMTDI AYFLLQPLRD ANILVDKSDL GIAYRKVVRG 301: LCYEMRIEDA ESVVLDMEKH GIDPDVYVYS AIIEGHRKNM NIPKAVDVFN KMLKKRKRIN CVIVSSILQC YCQMGNFSEA YDLFKEFRET NISLDRVCYN 401: VAFDALGKLG KVEEAIELFR EMTGKGIAPD VINYTTLIGG CCLQGKCSDA FDLMIEMDGT GKTPDIVIYN VLAGGLATNG LAQEAFETLK MMENRGVKPT 501: YVTHNMVIEG LIDAGELDKA EAFYESLEHK SRENDASMVK GFCAAGCLDH AFERFIRLEF PLPKSVYFTL FTSLCAEKDY ISKAQDLLDR MWKLGVEPEK 601: SMYGKLIGAW CRVNNVRKAR EFFEILVTKK IVPDLFTYTI MINTYCRLNE PKQAYALFED MKRRDVKPDV VTYSVLLNSD PELDMKREME AFDVIPDVVY 701: YTIMINRYCH LNDLKKVYAL FKDMKRREIV PDVVTYTVLL KNKPERNLSR EMKAFDVKPD VFYYTVLIDW QCKIGDLGEA KRIFDQMIES GVDPDAAPYT 801: ALIACCCKMG YLKEAKMIFD RMIESGVKPD VVPYTALIAG CCRNGFVLKA VKLVKEMLEK GIKPTKASLS AVHYAKLKAK GLR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)