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AT1G13740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ABI five binding protein 2
Curator
Summary (TAIR10)
Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent.
Computational
Description (TAIR10)
ABI five binding protein 2 (AFP2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein (TAIR:AT1G69260.1); Has 207 Blast hits to 201 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 185; Viruses - 3; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioGrid:23174DIP:DIP-58589NeggNOG:ENOG410IWD6eggNOG:ENOG410YWGTEMBL:AC027656EMBL:AY056326EMBL:BT024887
EMBL:CP002684EnsemblPlants:AT1G13740EnsemblPlants:AT1G13740.1entrez:837934GeneID:837934Genevisible:Q9LMX5GO:GO:0005634
GO:GO:0007165GO:GO:0009414GO:GO:0009737Gramene:AT1G13740.1hmmpanther:PTHR31413hmmpanther:PTHR31413:SF4HOGENOM:HOG000239856
InParanoid:Q9LMX5IntAct:Q9LMX5InterPro:IPR012463InterPro:IPR031307InterPro:IPR032308InterPro:IPR032310KEGG:ath:AT1G13740
ncoils:CoilOMA:AEMEEEWPANTHER:PTHR31413PaxDb:Q9LMX5Pfam:PF07897Pfam:PF16135Pfam:PF16136
Pfam:Q9LMX5PhylomeDB:Q9LMX5PIR:G86270PRIDE:Q9LMX5PRO:PR:Q9LMX5Proteomes:UP000006548RefSeq:NP_563933.1
STRING:3702.AT1G13740.1TAIR:AT1G13740tair10-symbols:AFP2UniGene:At.48184UniGene:At.71063UniProt:Q9LMX5
Coordinates (TAIR10) chr1:+:4713969..4715158
Molecular Weight (calculated) 38213.40 Da
IEP (calculated) 7.99
GRAVY (calculated) -0.85
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)