AT1G13630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.956 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1); Has 58870 Blast hits to 14575 proteins in 299 species: Archae - 3; Bacteria - 47; Metazoa - 773; Fungi - 914; Plants - 55536; Viruses - 0; Other Eukaryotes - 1597 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4669784..4672826 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91208.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.35 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 806 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDESLPTTN STSDHRGFYK EILFGMKKIG FREFLHGYHF RGLVSELRHV HVEEIMDELM SESSDLSVWF FKELRDIYAF RHSSFSTLLV SHVLAGQRRF 101: KELQVILEQL LQEEGTFRKW ESTGLVWDML LFLSSRLRMV DDSLYILKKM KDQNLNVSTQ SYNSVLYHFR ETDKMWDVYK EIKDKNEHTY STVVDGLCRQ 201: QKLEDAVLFL RTSEWKDIGP SVVSFNSIMS GYCKLGFVDM AKSFFCTVLK CGLVPSVYSH NILINGLCLV GSIAEALELA SDMNKHGVEP DSVTYNILAK 301: GFHLLGMISG AWEVIRDMLD KGLSPDVITY TILLCGQCQL GNIDMGLVLL KDMLSRGFEL NSIIPCSVML SGLCKTGRID EALSLFNQMK ADGLSPDLVA 401: YSIVIHGLCK LGKFDMALWL YDEMCDKRIL PNSRTHGALL LGLCQKGMLL EARSLLDSLI SSGETLDIVL YNIVIDGYAK SGCIEEALEL FKVVIETGIT 501: PSVATFNSLI YGYCKTQNIA EARKILDVIK LYGLAPSVVS YTTLMDAYAN CGNTKSIDEL RREMKAEGIP PTNVTYSVIF KGLCRGWKHE NCNHVLRERI 601: FEKCKQGLRD MESEGIPPDQ ITYNTIIQYL CRVKHLSGAF VFLEIMKSRN LDASSATYNI LIDSLCVYGY IRKADSFIYS LQEQNVSLSK FAYTTLIKAH 701: CVKGDPEMAV KLFHQLLHRG FNVSIRDYSA VINRLCRRHL MNCFPGQSNG VCCLISNERS FVYCPILSAN CRRHTLSVEK LSHEVLLKMK SQLGQKRTGE 801: SKGSGQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)