AT1G13410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 37390 Blast hits to 13439 proteins in 200 species: Archae - 0; Bacteria - 4; Metazoa - 27; Fungi - 54; Plants - 36888; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4601526..4603174 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53170.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.26 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.00 | ||||||||||||||||||||||||||||||||
| Length | 474 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MITSLRDSSL LVAESRELIT HAKCSTESLN QMFLFGMLCL MGVIASANKV FCEMVEKNVV LWTSMINGYL LNKDLVSARR YFDLSPERDI VLWNTMISGY 101: IEMGNMLEAR SLFDQMPCRD VMSWNTVLEG YANIGDMEAC ERVFDDMPER NVFSWNGLIK GYAQNGRVSE VLGSFKRMVD EGSVVPNDAT MTLVLSACAK 201: LGAFDFGKWV HKYGETLGYN KVDVNVKNAL IDMYGKCGAI EIAMEVFKGI KRRDLISWNT MINGLAAHGH GTEALNLFHE MKNSGISPDK VTFVGVLCAC 301: KHMGLVEDGL AYFNSMFTDF SIMPEIEHCG CVVDLLSRAG FLTQAVEFIN KMPVKADAVI WATLLGASKV YKKVDIGEVA LEELIKLEPR NPANFVMLSN 401: IYGDAGRFDD AARLKVAMRD TGFKKEAGVS WIETDDGLVK FYSSGEKHPR TEELQRILRE LKSFNILRDE EHFM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)