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AT1G13270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : methionine aminopeptidase 1B
Curator
Summary (TAIR10)
Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C.
Computational
Description (TAIR10)
methionine aminopeptidase 1B (MAP1C); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 1C (TAIR:AT3G25740.1); Has 18008 Blast hits to 17988 proteins in 2832 species: Archae - 481; Bacteria - 12145; Metazoa - 393; Fungi - 260; Plants - 253; Viruses - 0; Other Eukaryotes - 4476 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G13270-MONOMERBioCyc:ARA:GQT-2392-MONOMERBioGrid:23127EC:3.4.11.18eggNOG:COG0024eggNOG:KOG2738EMBL:AC011810
EMBL:AF250961EMBL:BT000449EMBL:BT001213EMBL:CP002684EnsemblPlants:AT1G13270EnsemblPlants:AT1G13270.1entrez:837887
ExpressionAtlas:Q9FV52Gene3D:3.90.230.10GeneID:837887Genevisible:Q9FV52GO:GO:0004177GO:GO:0005739GO:GO:0008235
GO:GO:0009507GO:GO:0031365GO:GO:0046872HAMAP:MF_01974hmmpanther:PTHR10804hmmpanther:PTHR10804:SF68HOGENOM:HOG000030427
InParanoid:Q9FV52InterPro:IPR000994InterPro:IPR001714InterPro:IPR002467KEGG:ath:AT1G13270KO:K01265MEROPS:M24.A05
OMA:LGTHEWEPaxDb:Q9FV52Pfam:PF00557Pfam:Q9FV52PhylomeDB:Q9FV52PIR:C86267PRIDE:Q9FV52
PRINTS:PR00599PRO:PR:Q9FV52PROSITE:PS00680ProteinModelPortal:Q9FV52Proteomes:UP000006548RefSeq:NP_172785.1scanprosite:PS00680
SMR:Q9FV52STRING:3702.AT1G13270.1SUPFAM:SSF55920TAIR:AT1G13270tair10-symbols:MAP1Btair10-symbols:MAP1CTIGRfam:TIGR00500
TIGRFAMs:TIGR00500UniGene:At.21097UniProt:Q9FV52
Coordinates (TAIR10) chr1:+:4544999..4547155
Molecular Weight (calculated) 40426.40 Da
IEP (calculated) 7.48
GRAVY (calculated) -0.19
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSVFLSSF SSSSSLQLCS SFHGEYLAPS RCFLGAPVTS SSLSLSGKKN SYSPRQFHVS AKKVSGLEEA IRIRKMRELE TKSKVRRNPP LRRGRVSPRL
101: LVPDHIPRPP YVESGVLPDI SSEFQIPGPE GIAKMRAACE LAARVLNYAG TLVKPSVTTN EIDKAVHDMI IEAGAYPSPL GYGGFPKSVC TSVNECMCHG
201: IPDSRQLQSG DIINIDVTVY LDGYHGDTSR TFFCGEVDEG FKRLVKVTEE CLERGIAVCK DGASFKKIGK RISEHAEKFG YNVVERFVGH GVGPVFHSEP
301: LIYHYRNDEP GLMVEGQTFT IEPILTIGTT ECVTWPDNWT TLTADGGVAA QFEHTILITR TGSEILTKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)