AT1G13230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a leucine-rich repeat protein pii-2. Located in the endoplasmic reticulum/plasma membrane continuum in Arabidopsis roots. Required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction, response to symbiotic fungus, symbiosis, encompassing mutualism through parasitism; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G25670.1); Has 75840 Blast hits to 27072 proteins in 996 species: Archae - 26; Bacteria - 3700; Metazoa - 16664; Fungi - 635; Plants - 50198; Viruses - 0; Other Eukaryotes - 4617 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4520679..4522439 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47091.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.33 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 424 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLWQTFFSSL LLLSLLFGCN GDESLPEVTD SEEAPMDKRE REALYSAIQG FVGDSWNGSA LYPDPCGWTP IQGVSCDIYN DLWYVTDLSL GLIYENSLPC 101: SSSLQIRPEL FELKHLRSLS FFNCFISPMV IAKEELWTNF ASNLESLEFR SNPGLIGELP ETIGNLTKLK SLVVLENGFS GELPASICNL KRLKRLVFAG 201: NSFAGMIPNC FKGLKELLIL DLSRNSFSGT LPTSFGDLVS LLKLDLSNNL LEGNLPQELG FLKNLTLLDL RNNRFSGGLS KNIENIQSLT ELVLSNNPMG 301: EEDMVGTNWG KMSNLVVLDL SKMGLRGEIP TSLTNLKRLR FLGLNNNNLT GFVPSKKLEA LPCLGALYIN GNNLTGELRF STKFYEKMGR RFKASKNPNL 401: CQPLEMVMSE SHKHLSPLGV KPCT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)