suba logo
AT1G13170.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.933
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : OSBP(oxysterol binding protein)-related protein 1D
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
OSBP(oxysterol binding protein)-related protein 1D (ORP1D); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.1); Has 2556 Blast hits to 2421 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 1277; Fungi - 705; Plants - 299; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP9EeggNOG:KOG1737EMBL:AC007357EMBL:AF462814EMBL:CP002684EnsemblPlants:AT1G13170EnsemblPlants:AT1G13170.1
entrez:837875ExpressionAtlas:Q9SAF0Gene3D:2.30.29.30GeneID:837875Genevisible:Q9SAF0GO:GO:0006869GO:GO:0008289
hmmpanther:PTHR10972hmmpanther:PTHR10972:SF67HOGENOM:HOG000231234InParanoid:Q9SAF0InterPro:IPR000648InterPro:IPR001849InterPro:IPR011993
ncoils:CoilPANTHER:PTHR10972PaxDb:Q9SAF0Pfam:PF01237Pfam:PF15413Pfam:Q9SAF0Pfscan:PS50003
PhylomeDB:Q9SAF0PIR:A86266PRIDE:Q9SAF0PRO:PR:Q9SAF0PROSITE:PS50003ProteinModelPortal:Q9SAF0Proteomes:UP000006548
RefSeq:NP_172776.1SMART:SM00233SMR:Q9SAF0STRING:3702.AT1G13170.2SUPFAM:0051579SUPFAM:SSF50729TAIR:AT1G13170
tair10-symbols:ORP1DUniGene:At.28266UniProt:Q9SAF0
Coordinates (TAIR10) chr1:-:4488826..4492278
Molecular Weight (calculated) 92336.90 Da
IEP (calculated) 6.47
GRAVY (calculated) -0.57
Length 816 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPLCCIAPV SIDDRTNPVV AKSSNHHLGL EAIPVSKHAS KPSFSTQASW ISQDQLERLS SEVVDDVNLD GKDASSSSNK GCFFFGNCVG AGAGVAGIMY
101: KWVNYGKGWR ARWFELEDGV LSYYKIHGPD KIVMNPSREK GVRVIGEESV RYIRKASCGS SNRLGASAVA ASRPCKPFGE IHLKVSSIRA SKSDDKRLAI
201: FTGTKTLHLR CVSKENRAAW VEAFQVAKDL FPRVASGDIL PSEDAVVSTE KLREKLLQEG VGETVVKDCE AIMLSEVSVL QNRLKVLTHK HIILLDTLRQ
301: LETEKIELEA TVVDETKEHD SCCGQGRRFS DFYSVMSEVS ASDSEADNES QDGADVESDE DDVPYFDTND ILSAEAMRSA SYRSREAEGN GSIYDKDPFF
401: SDRLQIPARI PQYPYVRRRD NLPEPKEKEK PVGLWSIIKE NIGKDLSGVC LPVYFNEPLS SLQKCFEDLE YSYLIDRALE WGKQGNELMR ILNIAAFAVS
501: GYASTEGRQC KPFNPLLGET YEADYPDKGL RFFSEKVSHH PMIVACHCEG QGWNFWGDSN IKGKFWGRSI QLDPVGVLTL KFDDGEIYQW SKVTTSIYNI
601: ILGKLYCDHY GTMRIKGGSN YSCRLKFKEQ SVIDRNPRQV HGFVQDNRTG EKVAILIGKW DEAMYYVLGD PTTKPKGYDP MTEAVLLWER DKSPTKTRYN
701: LSPFAISLNE ITPGMIDKLP PTDSRLRPDQ RHLENGEYES ANAEKLRLEQ LQRQARRLQE KGWKPRWFEK DEEGNYRYLG GYWEAREKKD WDRITDIFKK
801: QQQRNSLSSS SSSTFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)