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AT1G13160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: SDA1 family protein (TAIR:AT4G31520.1); Has 29206 Blast hits to 13573 proteins in 931 species: Archae - 207; Bacteria - 10267; Metazoa - 6952; Fungi - 3668; Plants - 1163; Viruses - 549; Other Eukaryotes - 6400 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPHIeggNOG:KOG2229EMBL:AK226773EMBL:CP002684
EnsemblPlants:AT1G13160EnsemblPlants:AT1G13160.1entrez:837874GeneID:837874
GO:GO:0000055GO:GO:0005623GO:GO:0030036GO:GO:0042273
Gramene:AT1G13160.1hmmpanther:PTHR12730hmmpanther:PTHR12730:SF0InterPro:IPR007949
InterPro:IPR012977InterPro:IPR016024InterPro:IPR027312KEGG:ath:AT1G13160
KO:K14856OMA:IRSMKRQPANTHER:PTHR12730:SF0Pfam:PF05285
Pfam:PF08158PhylomeDB:Q0WVH7Proteomes:UP000006548RefSeq:NP_172775.1
STRING:3702.AT1G13160.1SUPFAM:SSF48371TAIR:AT1G13160UniGene:At.42043
UniProt:Q0WVH7
Coordinates (TAIR10) chr1:+:4484634..4488388
Molecular Weight (calculated) 89311.10 Da
IEP (calculated) 7.70
GRAVY (calculated) -0.62
Length 804 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGSLGLTPA SLKASGRSSE NVSLLTLQGK IKRDPEGYET ELQLIYKQFK TSVDLFHELA ALSFSSTGGI GSDPSVSKDL GDRAMFLAHV TPFYPKQLAA
101: FPAQLTGLLR TSCLAMPSGL RNHIAQALIL LMNRKSLVIE DLLALFLDIQ TLGDKNLRNL AFGHIVQTIR KMSITDPKHK SLQKIVISML EQEDEAKAKR
201: ALATLCALHK KKIWLGDKNE RVAIAICEAC FHSSPRIMIS ALRFLLDYEN IDDDDDSDAE SDDDEESKKI DQVVINRQAV YKANNKGTSS SKKKKQAKLQ
301: RAVKSIKRKQ RSSSENTTST FSPLNHLNDA QKFAEKLFSR LQTIKGSGER VETRLMMIKV IARTIGLHKL HLLSFYPFLQ NYALPHVKDI TQILAAAVQS
401: CHDGVPSDVV EPLFKQIVNQ FVHDKSRPEA IAVGLNVVRE MCLRVHDLMT EELLQDLALY KKSHEKAISA AARSLIALFR EINPSLLVKK DRGRPGATVF
501: IPKHYGESNV FSNVPNVELL QESDNESGSD GDQDDDGVEL PIGDDVEQEL IPGDCGSEDK AEEDSNDGDD MNNTEDDSDI DTSIGGDEDE EVNDSDEADT
601: DSENEEIESE EEDGEASDSS VEDSGNKEKA KGKKRKIVDF DANLLSADTS LRALKRFAEA KNEKPSFDEG DGILSNEDFR KIKTLQAKKE AKIALARKGF
701: KVPNSDQLSK KRVDPAKLEA HIRHKLTKEQ RLELVKAGRE DRGKYKSKAA VKQKKTGGSS NKQKEHRKNM PLAAIRSKAG KSKRIKKMKN SISGSQFRGR
801: KAWK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)