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AT1G13040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1); Has 55149 Blast hits to 14680 proteins in 295 species: Archae - 3; Bacteria - 38; Metazoa - 581; Fungi - 873; Plants - 52114; Viruses - 0; Other Eukaryotes - 1540 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007357EMBL:CP002684EnsemblPlants:AT1G13040EnsemblPlants:AT1G13040.1entrez:837861
Gene3D:1.25.40.10GeneID:837861Genevisible:Q9SAD9GO:GO:0005739GO:GO:0005774Gramene:AT1G13040.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF513HOGENOM:HOG000005801InParanoid:Q9SAD9InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9SAD9KEGG:ath:AT1G13040
OMA:RVFSIDYPaxDb:Q9SAD9Pfam:PF01535Pfam:PF13041Pfam:Q9SAD9Pfscan:PS51375PhylomeDB:Q9SAD9
PIR:D86264PRIDE:Q9SAD9PRO:PR:Q9SAD9PROSITE:PS51375ProteinModelPortal:Q9SAD9Proteomes:UP000006548RefSeq:NP_172763.1
SMR:Q9SAD9STRING:3702.AT1G13040.1TAIR:AT1G13040TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.51593UniProt:Q9SAD9
Coordinates (TAIR10) chr1:+:4447647..4449200
Molecular Weight (calculated) 58679.50 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.02
Length 517 amino acids
Sequence (TAIR10)
(BLAST)
001: MHQTLGAVRL AYRSRIANLV KSGMIDNAVQ VFDEMRHSSY RVFSFDYNRF IGVLVRESRF ELAEAIYWDM KPMGFSLIPF TYSRFISGLC KVKKFDLIDA
101: LLSDMETLGF IPDIWAFNVY LDLLCRENKV GFAVQTFFCM VQRGREPDVV SYTILINGLF RAGKVTDAVE IWNAMIRSGV SPDNKACAAL VVGLCHARKV
201: DLAYEMVAEE IKSARVKLST VVYNALISGF CKAGRIEKAE ALKSYMSKIG CEPDLVTYNV LLNYYYDNNM LKRAEGVMAE MVRSGIQLDA YSYNQLLKRH
301: CRVSHPDKCY NFMVKEMEPR GFCDVVSYST LIETFCRASN TRKAYRLFEE MRQKGMVMNV VTYTSLIKAF LREGNSSVAK KLLDQMTELG LSPDRIFYTT
401: ILDHLCKSGN VDKAYGVFND MIEHEITPDA ISYNSLISGL CRSGRVTEAI KLFEDMKGKE CCPDELTFKF IIGGLIRGKK LSAAYKVWDQ MMDKGFTLDR
501: DVSDTLIKAS CSMSADA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)