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AT1G12910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.596
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Encodes a protein with similarity to the petunia WD repeat protein an11.
Computational
Description (TAIR10)
ANTHOCYANIN11 (ATAN11); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G26640.1); Has 4731 Blast hits to 4446 proteins in 351 species: Archae - 6; Bacteria - 291; Metazoa - 1848; Fungi - 1200; Plants - 767; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).
Protein Annotations
BioGrid:23089eggNOG:ENOG410XQ78eggNOG:KOG0290EMBL:AC012187EMBL:AY087676EMBL:AY093101EMBL:AY128776
EMBL:CP002684EMBL:U94746EnsemblPlants:AT1G12910EnsemblPlants:AT1G12910.1entrez:837849Gene3D:2.130.10.10GeneID:837849
Genevisible:Q9LPV9GO:GO:0005634GO:GO:0009718GO:GO:0043153GO:GO:0044212GO:GO:0048511GO:GO:0048573
Gramene:AT1G12910.1hmmpanther:PTHR19919HOGENOM:HOG000260968InParanoid:Q9LPV9InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775iPTMnet:Q9LPV9KEGG:ath:AT1G12910KO:K11805OMA:EAPWPLYPaxDb:Q9LPV9Pfam:PF00400
Pfam:Q9LPV9Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9LPV9PIR:G86262PRIDE:Q9LPV9PRO:PR:Q9LPV9
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q9LPV9Proteomes:UP000006548RefSeq:NP_172751.1scanprosite:PS00678
SMART:SM00320SMR:Q9LPV9STRING:3702.AT1G12910.1SUPFAM:SSF50978TAIR:AT1G12910tair10-symbols:ATAN11tair10-symbols:LWD1
UniGene:At.23958UniGene:At.62609UniProt:Q9LPV9
Coordinates (TAIR10) chr1:-:4395114..4396154
Molecular Weight (calculated) 39090.70 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.39
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)