suba logo
AT1G12900.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glyceraldehyde 3-phosphate dehydrogenase A subunit 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glycolysis, glucose metabolic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 24704 Blast hits to 24695 proteins in 6149 species: Archae - 47; Bacteria - 10700; Metazoa - 2230; Fungi - 2778; Plants - 3753; Viruses - 0; Other Eukaryotes - 5196 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-230-MONOMERBioCyc:ARA:GQT-231-MONOMERBioCyc:ARA:GQT-232-MONOMERBioGrid:23088EC:1.2.1.13eggNOG:COG0057eggNOG:KOG0657
EMBL:AC012187EMBL:AK318953EMBL:BT008637EMBL:BT015867EMBL:CP002684EnsemblPlants:AT1G12900EnsemblPlants:AT1G12900.1
entrez:837848ExpressionAtlas:Q9LPW0Gene3D:3.40.50.720GeneID:837848Genevisible:Q9LPW0GO:GO:0006006GO:GO:0009507
GO:GO:0009570GO:GO:0009941GO:GO:0016020GO:GO:0019253GO:GO:0047100GO:GO:0048046GO:GO:0050661
GO:GO:0051287gramene_plant_reactome:1119519gramene_plant_reactome:6877158hmmpanther:PTHR10836hmmpanther:PTHR10836:SF38HOGENOM:HOG000071679InParanoid:Q9LPW0
IntAct:Q9LPW0InterPro:IPR006424InterPro:IPR016040InterPro:IPR020828InterPro:IPR020829InterPro:IPR020830InterPro:IPR020831
KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12OMA:VDFVFESPANTHER:PTHR10836PaxDb:Q9LPW0Pfam:PF00044Pfam:PF02800
Pfam:Q9LPW0PhylomeDB:Q9LPW0PIR:F86262PIRSF:PIRSF000149PRIDE:Q9LPW0PRINTS:PR00078PRO:PR:Q9LPW0
ProMEX:Q9LPW0PROSITE:PS00071ProteinModelPortal:Q9LPW0Proteomes:UP000006548RefSeq:NP_001117276.1RefSeq:NP_001184977.1RefSeq:NP_172750.1
scanprosite:PS00071SMART:SM00846SMR:Q9LPW0STRING:3702.AT1G12900.1SUPFAM:SSF51735SUPFAM:SSF55347TAIR:AT1G12900
tair10-symbols:GAPA-2TIGRfam:TIGR01534TIGRFAMs:TIGR01534UniGene:At.28212unipathway:UPA00109UniPathway:UPA00116UniProt:Q9LPW0
Coordinates (TAIR10) chr1:-:4392634..4394283
Molecular Weight (calculated) 42849.20 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.05
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MASATFSVAK PSLQGFSEFS GLRNSSALPF AKRSSSDEFV SFVSFQTSAM RSNGGYRKGV TEAKIKVAIN GFGRIGRNFL RCWHGRKDSP LDVVVINDTG
101: GVKQASHLLK YDSTLGIFDA DVKPSGDSAL SVDGKIIKIV SDRNPSNLPW GELGIDLVIE GTGVFVDRDG AGKHLQAGAK KVLITAPGKG DIPTYVVGVN
201: AELYSHEDTI ISNASCTTNC LAPFVKVLDQ KFGIIKGTMT TTHSYTGDQR LLDASHRDLR RARAAALNIV PTSTGAAKAV ALVLPNLKGK LNGIALRVPT
301: PNVSVVDLVV QVSKKTFAEE VNAAFRDAAE KELKGILDVC DEPLVSVDFR CSDVSSTIDS SLTMVMGDDM VKVIAWYDNE WGYSQRVVDL ADIVANNWK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)