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AT1G12840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.500
vacuole 0.500
ASURE: golgi,vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3)
Curator
Summary (TAIR10)
Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8.
Computational
Description (TAIR10)
DE-ETIOLATED 3 (DET3); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: lignin biosynthetic process, regulation of carbohydrate biosynthetic process, unidimensional cell growth; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1 complex, subunit C (InterPro:IPR004907); Has 563 Blast hits to 541 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 263; Fungi - 140; Plants - 72; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Protein Annotations
BioGrid:23080eggNOG:COG5127eggNOG:KOG2909EMBL:AC012187EMBL:AF208261EMBL:AF334725EMBL:AY059872
EMBL:AY093334EMBL:CP002684EnsemblPlants:AT1G12840EnsemblPlants:AT1G12840.1entrez:837840ExpressionAtlas:Q9SDS7GeneID:837840
Genevisible:Q9SDS7GO:GO:0000221GO:GO:0000325GO:GO:0005773GO:GO:0005774GO:GO:0005794GO:GO:0005886
GO:GO:0009507GO:GO:0009826GO:GO:0015078GO:GO:0015991Gramene:AT1G12840.1hmmpanther:PTHR10137HOGENOM:HOG000207528
InParanoid:Q9SDS7IntAct:Q9SDS7InterPro:IPR004907iPTMnet:Q9SDS7KEGG:ath:AT1G12840KO:K02148MINT:MINT-1772204
ncoils:CoilOMA:NSEYLITPANTHER:PTHR10137PaxDb:Q9SDS7Pfam:PF03223Pfam:Q9SDS7PhylomeDB:Q9SDS7
PIR:T52300PRIDE:Q9SDS7PRO:PR:Q9SDS7ProteinModelPortal:Q9SDS7Proteomes:UP000006548Reactome:R-ATH-77387Reactome:R-ATH-917977
RefSeq:NP_563916.1SMR:Q9SDS7STRING:3702.AT1G12840.1SUPFAM:0049812TAIR:AT1G12840tair10-symbols:ATVHA-Ctair10-symbols:DET3
TCDB:3.A.2.2.5UniGene:At.21380UniProt:C0SUV0UniProt:Q9SDS7
Coordinates (TAIR10) chr1:+:4375584..4378220
Molecular Weight (calculated) 42621.50 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.28
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)