suba logo
AT1G12820.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.896
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : auxin signaling F-box 3
Curator
Summary (TAIR10)
Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots.
Computational
Description (TAIR10)
auxin signaling F-box 3 (AFB3); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: auxin signaling F-box 2 (TAIR:AT3G26810.1); Has 2450 Blast hits to 1661 proteins in 170 species: Archae - 0; Bacteria - 4; Metazoa - 823; Fungi - 153; Plants - 1347; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Protein Annotations
BioGrid:23078eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AC012187EMBL:AK227280EMBL:AY099541EMBL:BT002118
EMBL:CP002684EnsemblPlants:AT1G12820EnsemblPlants:AT1G12820.1entrez:837838Gene3D:3.80.10.10GeneID:837838Genevisible:Q9LPW7
GO:GO:0000822GO:GO:0002237GO:GO:0005634GO:GO:0006952GO:GO:0009734GO:GO:0010011GO:GO:0010152
GO:GO:0016567GO:GO:0019005GO:GO:0048443GO:GO:0048527GO:GO:0071249GO:GO:0080022Gramene:AT1G12820.1
hmmpanther:PTHR24006hmmpanther:PTHR24006:SF456HOGENOM:HOG000239805InParanoid:Q9LPW7IntAct:Q9LPW7InterPro:IPR001810InterPro:IPR032675
KEGG:ath:AT1G12820OMA:MEQNEEDPaxDb:Q9LPW7Pfam:Q9LPW7PhylomeDB:Q9LPW7PIR:F86261PRIDE:Q9LPW7
PRO:PR:Q9LPW7ProteinModelPortal:Q9LPW7Proteomes:UP000006548RefSeq:NP_563915.1SMART:SM00256SMR:Q9LPW7STRING:3702.AT1G12820.1
SUPFAM:SSF52047TAIR:AT1G12820tair10-symbols:AFB3UniGene:At.23978UniGene:At.71229UniPathway:UPA00143UniProt:Q9LPW7
Coordinates (TAIR10) chr1:-:4368879..4370780
Molecular Weight (calculated) 64909.80 Da
IEP (calculated) 7.22
GRAVY (calculated) -0.07
Length 577 amino acids
Sequence (TAIR10)
(BLAST)
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)