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AT1G12630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G52020.1); Has 5560 Blast hits to 5541 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 5552; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVXIeggNOG:ENOG41105GQEMBL:AC025417EMBL:AY560893
EMBL:CP002684EMBL:DQ145776EMBL:DQ446245EMBL:DQ652834
EnsemblPlants:AT1G12630EnsemblPlants:AT1G12630.1entrez:837819Gene3D:3.30.730.10
GeneID:837819Genevisible:Q38Q39GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009873Gramene:AT1G12630.1
hmmpanther:PTHR31985hmmpanther:PTHR31985:SF9HOGENOM:HOG000237624InParanoid:Q38Q39
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT1G12630OMA:KDPVYRG
PaxDb:Q38Q39Pfam:PF00847Pfam:Q38Q39Pfscan:PS51032
PhylomeDB:Q38Q39PIR:A86260PRIDE:Q38Q39PRINTS:PR00367
PRO:PR:Q38Q39PROSITE:PS51032ProteinModelPortal:Q38Q39Proteomes:UP000006548
RefSeq:NP_172723.2SMART:SM00380SMR:Q38Q39SUPFAM:SSF54171
TAIR:AT1G12630UniGene:At.50648UniProt:Q38Q39
Coordinates (TAIR10) chr1:+:4298897..4299475
Molecular Weight (calculated) 20771.30 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.60
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSSMASAGL GSRRKDPVYR GIRCRSGKWV SEIREPRKTT RIWLGTYPMA EMAAAAYDVA AMALKGREAV LNFPGSVGSY PVPESTSAAD IRAAAAAAAA
101: MKGCEEGEEE KKAKEKKSSS SKSRARECHV DNDVGSSSWC GTEFMDEEEV LNMPNLLANM AEGMMVAPPS WMGSRPSDDS PENSNDEDLW GY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)