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AT1G12500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.804
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT3G11320.1); Has 2763 Blast hits to 2761 proteins in 260 species: Archae - 6; Bacteria - 37; Metazoa - 632; Fungi - 440; Plants - 1334; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).
Protein Annotations
BioGrid:23047eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AC025416EMBL:AC025417EMBL:AK117247EMBL:CP002684
EnsemblPlants:AT1G12500EnsemblPlants:AT1G12500.1entrez:837807GeneID:837807Genevisible:Q9LDH3GO:GO:0008643GO:GO:0016021
Gramene:AT1G12500.1hmmpanther:PTHR11132hmmpanther:PTHR11132:SF65HOGENOM:HOG000239973InParanoid:Q9LDH3InterPro:IPR004853KEGG:ath:AT1G12500
OMA:MILLPFTPaxDb:Q9LDH3Pfam:PF03151Pfam:Q9LDH3PhylomeDB:Q9LDH3PRIDE:Q9LDH3PRO:PR:Q9LDH3
ProteinModelPortal:Q9LDH3Proteomes:UP000006548RefSeq:NP_172712.1STRING:3702.AT1G12500.1TAIR:AT1G12500TMHMM:TMhelixUniGene:At.15269
UniProt:Q9LDH3
Coordinates (TAIR10) chr1:-:4263542..4264957
Molecular Weight (calculated) 38927.40 Da
IEP (calculated) 10.06
GRAVY (calculated) 0.69
Length 361 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEAQSWTTR RMSNPRFDAA ATAAPTIVDI PGTPPHSSAS SPLKPFFLSS PTVSPTILTA AIIAAWFGSN IGVLLLNKYL LFYYGFRYPI FLTMTHMLSC
101: AAYSSAVINI AGIVPRQHIL SRRQFLKILS LSAIFCLSVV CGNTSLRYIP VSFNQAIGAT TPFFTAVFSF LITCKTESTE VYLALLPVVS GIVLASNSEP
201: SFHLFGFLIC VASTAGRALK SVVQGIILTS ESEKLHSMNL LLYMAPMAAC ILLPFTLYIE GNVLRVLIEK ARTDPLIIFL LAGNATVAYL VNLTNFLVTK
301: HTSALTLQVL GNGKAAVAAG VSVLIFRNPV TVMGIAGFGV TIMGVVLYSE ARKRSKLLNQ K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)