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AT1G12480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : C4-dicarboxylate transporter/malic acid transport protein
Curator
Summary (TAIR10)
Encodes a membrane protein with 10 predicted transmembrane helices. SLAC1 is a multispanning membrane protein expressed predominantly in guard cells that plays a role in regulating cellular ion homeostasis and S-type anion currents. SLAC1 is important for normal stomatal closure in response to a variety of signals including elevated CO2, ozone, ABA, darkness, and humidity. SLAC1:GFP localizes to the plasma membrane.
Computational
Description (TAIR10)
OZONE-SENSITIVE 1 (OZS1); CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAC1 homologue 3 (TAIR:AT5G24030.1); Has 903 Blast hits to 900 proteins in 365 species: Archae - 17; Bacteria - 650; Metazoa - 0; Fungi - 31; Plants - 165; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Protein Annotations
BioGrid:23045DIP:DIP-49025NeggNOG:ENOG410IIDVeggNOG:ENOG4111I0DEMBL:AC025416EMBL:AC025417EMBL:AF424557
EMBL:BT002640EMBL:CP002684EnsemblPlants:AT1G12480EnsemblPlants:AT1G12480.1entrez:837805GeneID:837805Genevisible:Q9LD83
GO:GO:0005886GO:GO:0006820GO:GO:0006873GO:GO:0008308GO:GO:0008509GO:GO:0009270GO:GO:0009737
GO:GO:0009738GO:GO:0010037GO:GO:0010118GO:GO:0010193GO:GO:0015698GO:GO:0015711GO:GO:0016021
GO:GO:0019901GO:GO:0019903GO:GO:0050891GO:GO:0090332GO:GO:0098656GO:GO:1902456GO:GO:1903959
Gramene:AT1G12480.1hmmpanther:PTHR31269hmmpanther:PTHR31269:SF11HOGENOM:HOG000237712InParanoid:Q9LD83IntAct:Q9LD83InterPro:IPR004695
iPTMnet:Q9LD83KEGG:ath:AT1G12480ncoils:CoilOMA:RINFFTGPaxDb:Q9LD83Pfam:PF03595Pfam:Q9LD83
PhylomeDB:Q9LD83PRIDE:Q9LD83PRO:PR:Q9LD83ProteinModelPortal:Q9LD83Proteomes:UP000006548RefSeq:NP_563909.1SMR:Q9LD83
STRING:3702.AT1G12480.1TAIR:AT1G12480tair10-symbols:CDI3tair10-symbols:OZS1tair10-symbols:RCD3tair10-symbols:SLAC1TCDB:2.A.16.5.1
TMHMM:TMhelixUniGene:At.48182UniGene:At.71145UniProt:Q9LD83
Coordinates (TAIR10) chr1:-:4257427..4259249
Molecular Weight (calculated) 63238.20 Da
IEP (calculated) 9.59
GRAVY (calculated) -0.05
Length 556 amino acids
Sequence (TAIR10)
(BLAST)
001: MERKQSNAHS TFADINEVED EAEQELQQQE NNNNKRFSGN RGPNRGKQRP FRGFSRQVSL ETGFSVLNRE SRERDDKKSL PRSGRSFGGF ESGGIINGGD
101: GRKTDFSMFR TKSTLSKQKS LLPSIIRERD IENSLRTEDG ETKDDSINEN VSAGRYFAAL RGPELDEVKD NEDILLPKEE QWPFLLRFPI GCFGICLGLS
201: SQAVLWLALA KSPATNFLHI TPLINLVVWL FSLVVLVSVS FTYILKCIFY FEAVKREYFH PVRVNFFFAP WVVCMFLAIS VPPMFSPNRK YLHPAIWCVF
301: MGPYFFLELK IYGQWLSGGK RRLCKVANPS SHLSVVGNFV GAILASKVGW DEVAKFLWAV GFAHYLVVFV TLYQRLPTSE ALPKELHPVY SMFIAAPSAA
401: SIAWNTIYGQ FDGCSRTCFF IALFLYISLV ARINFFTGFK FSVAWWSYTF PMTTASVATI KYAEAVPGYP SRALALTLSF ISTAMVCVLF VSTLLHAFVW
501: QTLFPNDLAI AITKRKLTRE KKPFKRAYDL KRWTKQALAK KISAEKDFEA EEESHH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)