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AT1G12470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.561
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:22318864 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pep3/Vps18/deep orange (InterPro:IPR007810), Zinc finger, RING-type (InterPro:IPR001841); Has 495 Blast hits to 471 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 170; Fungi - 162; Plants - 42; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSDeggNOG:KOG2034EMBL:CP002684EnsemblPlants:AT1G12470EnsemblPlants:AT1G12470.1entrez:837804Gene3D:3.30.40.10
GeneID:837804GO:GO:0005622GO:GO:0006886GO:GO:0008270GO:GO:0016192Gramene:AT1G12470.1hmmpanther:PTHR23323
hmmpanther:PTHR23323:SF26InParanoid:F4IDS7InterPro:IPR000547InterPro:IPR001841InterPro:IPR007810InterPro:IPR013083KEGG:ath:AT1G12470
ncoils:CoilOMA:VGVIRRMPaxDb:F4IDS7Pfam:PF00637Pfam:PF05131Pfscan:PS50236PRIDE:F4IDS7
PROSITE:PS50236ProteinModelPortal:F4IDS7Proteomes:UP000006548RefSeq:NP_172709.2SMART:SM00184SMR:F4IDS7STRING:3702.AT1G12470.1
SUPFAM:SSF57850TAIR:AT1G12470UniGene:At.48182UniGene:At.71145UniProt:F4IDS7
Coordinates (TAIR10) chr1:+:4251359..4257201
Molecular Weight (calculated) 112326.00 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.28
Length 988 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQGRQVFSV DLLERYATKN RGMITCMAAG NDVIVLGTSK GWIIRYDFGV GSSNDIDLAV GRTGEQSIHK VFVDPGGSHC IATVTGVGGA ETFYTHAKWL
101: KPRVLSRLKG LLVNAVAWNR QQITEVSTKE IILGTQDGQL FEMAVDEKDK REKYIKFLFE LEELPEAFKA LQMETANISS GMRYYVMAVT PTRLYSFTGI
201: GTLESVFASY KERAVHFMEL PGEIPNSELH FFIKQRRAVH FAWLSGTGIY HGGLNFGAQH SYPNGDENFV ENKALLDYSK LSDGTEAVKP GSMALSEYHF
301: LLLIGNKVKV VNRISEQIIE ELQFDITSDS VSRGIIGLCS DASANVFYAY DQNSIFQVSV IDEGRDMWKV YLDLKVYAAA LANCRDPLQR DQVYLVQAES
401: AFTDKEYLRA ASFYAKINYV ISFEEVTLKF ISINEPEALR TFLLHKLDNL SKDDKCQITM ISTWATELYL DKINRLLLED DTAIENRDSE YHSVIQEFRA
501: FMSDCKDELD EATTVKILES YGRVEELVYF ANLKEQYEIV VLHYIQQGEA KKALEVLQKS SVSVELQYQF APELIMLDAY ETVESWMANK NLNPRRLITA
601: MMRYSSGPHA KNETHEVIKY LEFCVHRLHN EDPGIHSLLL SLYAKQEDDG ALLRFLQCKF GKGRENGPEF FYDPKYALRL CLKERRTRAC VHIYSMMSMH
701: EEAVALALQI DPELAMAEAD KVEDDEDLRK KLWLMVAKHV VKQEKGAKRE NIRKAIAFLK ETDGLLKIED ILPFFPDFAL IDDFKEAICS SLEDYNKQIE
801: QLKEEMNDAT RGADNIRNDI SALTQRYAVI DRDEECGVCK RKILMMSGDF RMAQGYSSAG PLAPFYVFPC GHSFHAQCLI THVTSCAHEE QAEHILDLQK
901: QLTLLGSETR RDINGNRSDE PITSTTTADK LRSELDDAIA SECPFCGELM INEITLPFIK PEDSQYSTSW DLRSETNLAN QRTISLPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)